View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5460_high_6 (Length: 239)
Name: NF5460_high_6
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 38941984 - 38942173
Alignment:
| Q |
17 |
ttttaacaaagtaatactctaaggtaacctgcttttaagattataaagctttataactcnnnnnnnnggtcagattttaaagttctaaaagctnnnnnnn |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38941984 |
ttttaacaaagtaatactttaaggtaacatgcttttaagattataaagctttataactcaaaaaaaaaatcagattttaaagttctaaaagctaaaaaaa |
38942083 |
T |
|
| Q |
117 |
ncttccctagaatgaaagatataagatgaagaaatgagttggtatacctttgtacttttcactgaaaatcttaagctgggaaacaaacacc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
38942084 |
-cttccctagaatgaaagatataagatgaagaaatgagttggtatacctttgtactttttactgaaaatcctaagctgggaaacaaacacc |
38942173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University