View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5460_low_1 (Length: 420)
Name: NF5460_low_1
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 3299629 - 3300026
Alignment:
| Q |
18 |
agtagatacaaaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299629 |
agtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatct |
3299728 |
T |
|
| Q |
118 |
gattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299729 |
gattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgaca |
3299828 |
T |
|
| Q |
218 |
caaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299829 |
caaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgat |
3299928 |
T |
|
| Q |
318 |
gttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcact |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299929 |
gttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcact |
3300026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 3392522 - 3392919
Alignment:
| Q |
18 |
agtagatacaaaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392522 |
agtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatct |
3392621 |
T |
|
| Q |
118 |
gattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392622 |
gattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgaca |
3392721 |
T |
|
| Q |
218 |
caaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392722 |
caaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgat |
3392821 |
T |
|
| Q |
318 |
gttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcact |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392822 |
gttttgttacttccaataaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcact |
3392919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 41 - 381
Target Start/End: Complemental strand, 1163676 - 1163333
Alignment:
| Q |
41 |
ccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaaga |
140 |
Q |
| |
|
|||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1163676 |
ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga |
1163577 |
T |
|
| Q |
141 |
tctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttaga |
240 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| || | || | ||| |||||||||| |
|
|
| T |
1163576 |
tctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccatctggcccactcttcagatcccccttttat |
1163477 |
T |
|
| Q |
241 |
agacctttttatccattggaggatttgcttgatg---gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac |
337 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1163476 |
agacctttttttccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac |
1163377 |
T |
|
| Q |
338 |
caaaacaaggaagatgcttttcatttattagcttttttctattt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1163376 |
aaaaacaaggaagatgcttttcatttattagcttttttatattt |
1163333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 28 - 381
Target Start/End: Original strand, 40418404 - 40418758
Alignment:
| Q |
28 |
aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
40418404 |
aaccttcctgctgccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctcttcatgataagtgggaatctgattatcaac |
40418500 |
T |
|
| Q |
128 |
tcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatc-a |
226 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||| || ||||||| ||||||| ||| |||||| || | ||| ||| || || |
|
|
| T |
40418501 |
tcttcttcaatgatctacaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcgt |
40418600 |
T |
|
| Q |
227 |
aatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgtta |
326 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | || |||||||||| |
|
|
| T |
40418601 |
aatccccc-ctaccagaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttaatgttttgttt |
40418699 |
T |
|
| Q |
327 |
cttccaataac--caaaa--caaggaagatgcttttcatttattagcttttttctattt |
381 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
40418700 |
gttccaataacaacaaaaatcaaggaagatgcttttcatttattaggttctttctattt |
40418758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 41 - 286
Target Start/End: Original strand, 1850063 - 1850293
Alignment:
| Q |
41 |
ccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaaga |
140 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1850063 |
ccattttgattaccaagattagttttgctaaagaggagaatggtagagttattcctgttcaggataagtgggaatctgattatcaactcttcttaaaaga |
1850162 |
T |
|
| Q |
141 |
tctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttaga |
240 |
Q |
| |
|
| ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| || | || |||||| |||||| |||||| |
|
|
| T |
1850163 |
tttacaacaagaccctaaactcctcttcg---------------accgaaatccaaccaactgccatccatctggcccacccatcagatccccttttaga |
1850247 |
T |
|
| Q |
241 |
agacctttttatccattggaggatttgcttgatggatgatccactt |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1850248 |
agacctttttatccattggaggatttgcttgatggatgatctactt |
1850293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 28 - 381
Target Start/End: Original strand, 39879941 - 39880297
Alignment:
| Q |
28 |
aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
127 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39879941 |
aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac |
39880037 |
T |
|
| Q |
128 |
tcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatca- |
226 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||| ||||| | ||||||| ||||||| ||| |||||| || | ||| ||| || ||| |
|
|
| T |
39880038 |
tcttcttcaatgatctacaacaaaacactaaactcatcttcagcgtaagagcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcag |
39880137 |
T |
|
| Q |
227 |
aatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgtta |
326 |
Q |
| |
|
|||||||| || |||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||| || |
|
|
| T |
39880138 |
aatccccc-ctaccagacctttttttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt-ttt |
39880235 |
T |
|
| Q |
327 |
cttccaataacca-------aaacaaggaagatgcttttcatttattagcttttttctattt |
381 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39880236 |
gttccaataataacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt |
39880297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 28 - 381
Target Start/End: Original strand, 38987826 - 38988180
Alignment:
| Q |
28 |
aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
127 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38987826 |
aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac |
38987922 |
T |
|
| Q |
128 |
tcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaa |
227 |
Q |
| |
|
||||||| || ||||||||||||||| || |||| |||||| | || |||| ||||||||||| || |||| | | ||| |||| || || |
|
|
| T |
38987923 |
tcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcagcctaccgaaatccaaacaaccactacacatatgacgggcccttcgt |
38988022 |
T |
|
| Q |
228 |
atccccctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttac |
327 |
Q |
| |
|
| |||| || ||||||||| ||||||||||||| |||||||| |||||||| | | || |||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
38988023 |
agacccccctaccagaccttttgatccattggaggacttgcttgacggatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttg |
38988122 |
T |
|
| Q |
328 |
ttccaataacca----aaacaaggaagatgcttttcatttattagcttttttctattt |
381 |
Q |
| |
|
|||||||||| | || |||||||| |||| |||||||||||| || ||||||||| |
|
|
| T |
38988123 |
ttccaataacaacaacaatcaaggaagctgctcttcatttattaggttctttctattt |
38988180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 28 - 381
Target Start/End: Original strand, 39726545 - 39726906
Alignment:
| Q |
28 |
aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
127 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39726545 |
aaccttcctgctgccattttgatcagcaagattagttatgccgaagtg---aatggtagagttgttgctgtcaaggataagtgggaatctgattatcaac |
39726641 |
T |
|
| Q |
128 |
tcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaa |
227 |
Q |
| |
|
||||||| || ||||||||||||||| || |||| |||||| | || |||| ||||||||||| || |||| | | ||| |||| || || |
|
|
| T |
39726642 |
tcttcttcaatgatctacaacaagaccctcaactactcttcaagataacagcaccctaccgaaatccaaacaaccactacacatatgacgggcccttcgt |
39726741 |
T |
|
| Q |
228 |
atccccctttagaagacctttttatccattggaggatttgcttgatggatgat----ccacttacaagcttaaacaaacatcacttctattgatgttttg |
323 |
Q |
| |
|
| |||| || ||||||||| ||||||||||||| |||||||| ||||||| | | |||| |||||||||||| ||||| | | ||||||||||| |
|
|
| T |
39726742 |
agacccccctatcagaccttttgatccattggaggacttgcttgacggatgatctagctagttactagcttaaacaaaaatcacctttgttgatgttttg |
39726841 |
T |
|
| Q |
324 |
ttacttccaataacca-------aaacaaggaagatgcttttcatttattagcttttttctattt |
381 |
Q |
| |
|
|| ||||||||| | || |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39726842 |
tttgttccaataataacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt |
39726906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 39168974 - 39169101
Alignment:
| Q |
29 |
accttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtaga---gttgttgctgttcaggataagtgggaatctgattatca |
125 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||| | || || ||||||||| ||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
39168974 |
accttcctgctgcaattttgattaccaagagtagttatg---atgaagaaaatggtagaattgttgttgttgttgagggtaagtgggaatctgattatca |
39169070 |
T |
|
| Q |
126 |
actcttcttaaaagatctacaacaagacact |
156 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
39169071 |
actctttttaaaagatctacaacaagacact |
39169101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 39400042 - 39400084
Alignment:
| Q |
102 |
ggataagtgggaatctgattatcaactcttcttaaaagatcta |
144 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
39400042 |
ggataagtggcaatctgattatcaactcttcttagaagatcta |
39400084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 25912252 - 25912122
Alignment:
| Q |
28 |
aaccttcctgctgccattttgatcaccaagattagttatgcccaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
127 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25912252 |
aaccttcatgctgccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctgttcaggataagtgggaatctgattatcaac |
25912156 |
T |
|
| Q |
128 |
tcttcttaaaagatctacaacaagacactaaact |
161 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||| |
|
|
| T |
25912155 |
tcttcttaaattatctacagcaagaccctaaact |
25912122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 237 - 381
Target Start/End: Complemental strand, 44444543 - 44444395
Alignment:
| Q |
237 |
tagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa |
336 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||||| | ||||||||||||| |||||||| |
|
|
| T |
44444543 |
tagaagatcttttgttccattagaggacttgcttgacggatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataa |
44444444 |
T |
|
| Q |
337 |
ccaaaa----caaggaagatgcttttcatttattagcttttttctattt |
381 |
Q |
| |
|
| |||| ||||||| |||| ||||||||||||| || ||||||||| |
|
|
| T |
44444443 |
cgaaaacaatcaaggaatatgcctttcatttattaggttatttctattt |
44444395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 25912046 - 25911951
Alignment:
| Q |
241 |
agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa |
336 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | ||||||||||||| ||||||||| |
|
|
| T |
25912046 |
agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa |
25911951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 44444674 - 44444614
Alignment:
| Q |
91 |
gttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaag |
151 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||| |||| ||||||||| ||||| |||||| |
|
|
| T |
44444674 |
gttgttgttcaggataaattggaatctgattataaacttttcttaaaatatctaaaacaag |
44444614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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