View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5460_low_10 (Length: 238)
Name: NF5460_low_10
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460_low_10 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 787 - 571
Alignment:
| Q |
8 |
gaagcaaaggagtaatgatttttataacttccatgatttgactgtcacaaacacttcttttttaccgtaacttccctcttcttgcgcttttcccgtgcct |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
787 |
gaagtaaaggagtaatgatttttataacttccatgatttgactgtcaccaacacttcttttttaccgtaacttcccccttcttgcgcttttcccgtgcct |
688 |
T |
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| Q |
108 |
tccttccttccaaactgtaatcaaatcattactactgtaccaattttattttccatcaaataaattaaatacaaaaatcaaaaaccttagaaaggaatat |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
687 |
tccttccttccaaaccgtaatcaaatcattactactgtaccaattttattttccataaaataaattaaatacaaaaatcaaaaaccttagaaaggaatat |
588 |
T |
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| Q |
208 |
gttccccctggttaatg |
224 |
Q |
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|||||||| |||||||| |
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| T |
587 |
gttccccccggttaatg |
571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 42904099 - 42904315
Alignment:
| Q |
8 |
gaagcaaaggagtaatgatttttataacttccatgatttgactgtcacaaacacttcttttttaccgtaacttccctcttcttgcgcttttcccgtgcct |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42904099 |
gaagtaaaggagtaatgatttttataacttccatgatttgactgtcaccaacacttcttttttaccgtaacttcccccttcttgcgcttttcccgtgcct |
42904198 |
T |
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| Q |
108 |
tccttccttccaaactgtaatcaaatcattactactgtaccaattttattttccatcaaataaattaaatacaaaaatcaaaaaccttagaaaggaatat |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42904199 |
tccttccttccaaaccgtaatcaaatcattactactgtaccaattttattttccataaaataaattaaatacaaaaatcaaaaaccttagaaaggaatat |
42904298 |
T |
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| Q |
208 |
gttccccctggttaatg |
224 |
Q |
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|||||||| |||||||| |
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| T |
42904299 |
gttccccccggttaatg |
42904315 |
T |
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