View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5460_low_11 (Length: 210)
Name: NF5460_low_11
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460_low_11 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: scaffold0082 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 3793 - 3877
Alignment:
| Q |
58 |
ggggccagaacataagaaggtggtagacaatttagagagcttggaggaaaagatcaagaccataaagggtatagagaggcaccaa |
142 |
Q |
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| T |
3793 |
ggggccagaacataagaaggtggtagacaatttagagagcttggaggaaaagatcaagaccataaagggtatagagaggcaccaa |
3877 |
T |
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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 4196541 - 4196457
Alignment:
| Q |
58 |
ggggccagaacataagaaggtggtagacaatttagagagcttggaggaaaagatcaagaccataaagggtatagagaggcaccaa |
142 |
Q |
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| T |
4196541 |
ggggccagaacataagaaggtggtagacaatttagagagcttggaggaaaagatcaagaccataaagggtatagagaggcaccaa |
4196457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 4194787 - 4194735
Alignment:
| Q |
142 |
atttattatgttgtgcaggacttaactcttgaaaaagctgagactattgcttt |
194 |
Q |
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| T |
4194787 |
atttattatgttgtgcaggacttaactcttgaaaaagctgagactattgcttt |
4194735 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 50772454 - 50772495
Alignment:
| Q |
153 |
tgtgcaggacttaactcttgaaaaagctgagactattgcttt |
194 |
Q |
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| T |
50772454 |
tgtgcaggacttaactcttcaagaagctgagactattgcttt |
50772495 |
T |
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