View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5460_low_5 (Length: 251)
Name: NF5460_low_5
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460_low_5 |
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| [»] chr2 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 8718639 - 8718878
Alignment:
| Q |
12 |
atgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctatt |
111 |
Q |
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| T |
8718639 |
atgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctatt |
8718738 |
T |
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| Q |
112 |
tttcactccaaataaattagaactatcatgttctgacgataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaacattcagc |
211 |
Q |
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| T |
8718739 |
tttcactccaaataaattagaactatcatgttctgacgataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaacattcagc |
8718838 |
T |
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| Q |
212 |
ctagtgatgagcatctaatgaaagcttccaagtcttgaac |
251 |
Q |
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| T |
8718839 |
ctagtgatgagcatctaatgaaagcttccaagtcttgaac |
8718878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 8672327 - 8672568
Alignment:
| Q |
12 |
atgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctatt |
111 |
Q |
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| T |
8672327 |
atgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctatt |
8672426 |
T |
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| Q |
112 |
tttcactccaaataaattagaactatcatgttctgacg--ataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaacattca |
209 |
Q |
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| T |
8672427 |
tttcactccaaataaattagaactatcatgttctgacgatataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaacattta |
8672526 |
T |
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| Q |
210 |
gcctagtgatgagcatctaatgaaagcttccaagtcttgaac |
251 |
Q |
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| T |
8672527 |
gtctaatgatgagcatttaatgaaagcttccaaatcttgaac |
8672568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 8590843 - 8590909
Alignment:
| Q |
43 |
tacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctattt |
112 |
Q |
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| T |
8590843 |
tacagaaatatttgacttaataacaagagaataaatgt---ctaataatgataccaataaccctctattt |
8590909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 8590925 - 8590958
Alignment:
| Q |
110 |
tttttcactccaaataaattagaactatcatgtt |
143 |
Q |
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| T |
8590925 |
tttttcactccaaataaattagaactatcatgtt |
8590958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 23440104 - 23440036
Alignment:
| Q |
183 |
gaatcagcttgattgaagcaacattcagcctagtgatgagcatctaatgaaagcttccaagtcttgaac |
251 |
Q |
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| T |
23440104 |
gaatcaacttgattaaagcaactttcagtccagtgatgagcatctaatgaaagcttcaaaatcttgaac |
23440036 |
T |
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