View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5460_low_6 (Length: 241)
Name: NF5460_low_6
Description: NF5460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5460_low_6 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 36397122 - 36397362
Alignment:
| Q |
1 |
cataggtatacctcagttgtttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36397122 |
cataggtatacctcagttgtttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaa |
36397221 |
T |
|
| Q |
101 |
cgagatttgcaaacttttaatgcttcttttgtggaagaagataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36397222 |
cgagatttgcaaacttttaatgcttcttttgtggaagaagataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttg |
36397321 |
T |
|
| Q |
201 |
ttcagcaatctggtttcattcaaatattcacttggaacaat |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
36397322 |
ttcagcaatctggtttcattcaaatattcacttggaacaat |
36397362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 36373389 - 36373623
Alignment:
| Q |
10 |
acctcagttgtttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaacgagatttg |
109 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||| || |
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| T |
36373389 |
acctcagttgtttatgtacaaccatgattttccatggtggcgtggtggacattggaacggagcaatcttagtaggtgcacctaatatgaaacgagatatg |
36373488 |
T |
|
| Q |
110 |
caaacttttaatgcttcttttgtggaagaagat---aactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagc |
206 |
Q |
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| ||| |||| ||||||||||||||| ||| |||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36373489 |
gcgattttgaatgtttcttttgtggaagatgatgataactatgtagcaatctcatataacatgtttgataagtctgtcatagctaggatagttgttcagc |
36373588 |
T |
|
| Q |
207 |
aatctggtttcattcaaatattcacttggaacaat |
241 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
36373589 |
aatctggtttctttcaaatattcacttggaacaat |
36373623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 36404059 - 36404285
Alignment:
| Q |
5 |
ggtatacctcagttgtttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaacgag |
104 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |||| |||| |||||||||||||||||| |
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| T |
36404059 |
ggtaaacctcagttgtttatgtacaaccataaccttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgag |
36404158 |
T |
|
| Q |
105 |
atttgcaaacttttaatgcttcttttgtggaagaagataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttca |
204 |
Q |
| |
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|| || |||||||||| | ||||||||||||||| || |||| |||||| | ||||| |||||||||||||||||||||| |||||| ||||||| | |
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| T |
36404159 |
atatggaaacttttaacgtttcttttgtggaagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaa |
36404258 |
T |
|
| Q |
205 |
gcaatctggtttcattcaaatattcac |
231 |
Q |
| |
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|||||||||||| ||||||||||||| |
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| T |
36404259 |
tcaatctggtttctttcaaatattcac |
36404285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 36368773 - 36368993
Alignment:
| Q |
10 |
acctcagttgtttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaacgagatttg |
109 |
Q |
| |
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||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| || |
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| T |
36368773 |
acctcagttgtttatgtacaaccatgatcttccttggtggcgtggtggacactggaacggagaattatttgtaggtatacctaatatgaaacgagatatg |
36368872 |
T |
|
| Q |
110 |
caaacttttaatgcttcttttgtggaagaagataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagcaat |
209 |
Q |
| |
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|||||||||| |||||| || ||||| || ||||||||||||||| | || ||||||| |||||||||||||| |||| ||| |||||||||| |
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| T |
36368873 |
accacttttaatgtttctttggttgaagatgacaactatgtagcacttacgtataacatgttcgataagtctgtcattactagaatagcggttcagcaat |
36368972 |
T |
|
| Q |
210 |
ctggtttcattcaaatattca |
230 |
Q |
| |
|
|||||||| |||||| ||||| |
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| T |
36368973 |
ctggtttctttcaaacattca |
36368993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 36425548 - 36425765
Alignment:
| Q |
14 |
cagttgtttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaacgagatttgcaaa |
113 |
Q |
| |
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||||||||||||||||||| | | ||| | ||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||| || |
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| T |
36425548 |
cagttgtttatgtacaaccgtgatgttcgtttctggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccg |
36425647 |
T |
|
| Q |
114 |
cttttaatgcttcttttgtggaagaagataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagcaatctgg |
213 |
Q |
| |
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| ||| | |||||| || ||||| || |||||||||||||| ||||| |||||||| |||||| |||||| ||||| |||| |||||||||||||| |
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| T |
36425648 |
ttcgtaacgtttctttcgttgaagatgacaactatgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctgg |
36425747 |
T |
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| Q |
214 |
tttcattcaaatattcac |
231 |
Q |
| |
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|||| |||||| |||||| |
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| T |
36425748 |
tttctttcaaacattcac |
36425765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 36387356 - 36387571
Alignment:
| Q |
18 |
tgtttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaacgagatttgcaaacttt |
117 |
Q |
| |
|
|||| |||||||||||| | ||||| |||||||| ||||||||||||||||||||| || ||||| |||| |||||||||||||| || | ||| |
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| T |
36387356 |
tgttaatgtacaaccatgatcttccttggtggcgcggtggacattggaacggagcaaccttaataggtgcacctgatatgaaacgagatatggcgatttt |
36387455 |
T |
|
| Q |
118 |
taatgcttcttttgtggaagaagat---aactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagcaatctggt |
214 |
Q |
| |
|
|||| ||||||| ||||||| ||| |||||||||||| | ||||| ||||||| | ||||||||||||| ||||| |||| |||||||||||||| |
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|
| T |
36387456 |
gaatgtttcttttttggaagatgatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtagtgattcagcaatctggt |
36387555 |
T |
|
| Q |
215 |
ttcattcaaatattca |
230 |
Q |
| |
|
||| |||||| ||||| |
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| T |
36387556 |
ttccttcaaacattca |
36387571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 36411385 - 36411598
Alignment:
| Q |
17 |
ttgtttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaacgagatttgcaaactt |
116 |
Q |
| |
|
|||||||||||||||||| | | ||| ||||||||||||||||||||||| |||||| |||| ||||| ||||| |||||| | ||||| || | | |
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| T |
36411385 |
ttgtttatgtacaaccatgatcgtccttggtggcgtggtggacattggaatggagcaatattagtaggcctacctcatatgataggagatatggcagttc |
36411484 |
T |
|
| Q |
117 |
ttaatgcttcttttgtggaagaagataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagcaatctggttt |
216 |
Q |
| |
|
||||| ||||| || ||||| || ||||||||| |||| ||||| |||||||| ||||||||||||| | ||| |||| ||||||||||||||||| |
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| T |
36411485 |
gtaatgtttcttgggttgaagatgacaactatgtatcactctcatataacatgtttaataagtctgtcattacaaggatagtggttcagcaatctggttt |
36411584 |
T |
|
| Q |
217 |
cattcaaatattca |
230 |
Q |
| |
|
| |||||| ||||| |
|
|
| T |
36411585 |
ctttcaaacattca |
36411598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 36416716 - 36416929
Alignment:
| Q |
17 |
ttgtttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaacgagatttgcaaactt |
116 |
Q |
| |
|
|||||||||||||||||| | | ||| ||||||||||||||||||||||| |||||| |||| ||||| ||||| |||||| | ||||| || | | |
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| T |
36416716 |
ttgtttatgtacaaccatgatcgtccttggtggcgtggtggacattggaatggagcaatattagtaggcctacctcatatgataggagatatggcagttc |
36416815 |
T |
|
| Q |
117 |
ttaatgcttcttttgtggaagaagataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagcaatctggttt |
216 |
Q |
| |
|
||||| ||||| || ||||| || ||||||||| |||| ||||| |||||||| ||||||||||||| | ||| |||| ||||||||||||||||| |
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| T |
36416816 |
gtaatgtttcttgggttgaagatgacaactatgtatcactctcatataacatgtttaataagtctgtcattacaaggatagtggttcagcaatctggttt |
36416915 |
T |
|
| Q |
217 |
cattcaaatattca |
230 |
Q |
| |
|
| |||||| ||||| |
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|
| T |
36416916 |
ctttcaaacattca |
36416929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 36433411 - 36433619
Alignment:
| Q |
20 |
tttatgtacaaccataaccttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaacgagatttgcaaactttta |
119 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| || |||||| ||||||||||| |||| | |||||| ||||||| || | | ||||||| |
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|
| T |
36433411 |
tttatgtacaaacataaccttccctggtggcgtggtgaaccttggaatggagcactattatcaggtgtgcctaatgcgaaacgaaatagggacactttta |
36433510 |
T |
|
| Q |
120 |
atgcttcttttgtggaagaagataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagcaatctggtttcat |
219 |
Q |
| |
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| ||||||||| |||| || ||| |||||||||| | || ||||| |||||||||||||| | ||||| | || |||||||||||||||||| | |
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| T |
36433511 |
acatttcttttgttcaagatgacaacaatgtagcactcacgtataacatggttgataagtctgtcgttactaggatggtggttcagcaatctggtttctt |
36433610 |
T |
|
| Q |
220 |
tcaaatatt |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
36433611 |
tcaaatatt |
36433619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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