View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5461-Insertion-1 (Length: 1043)

Name: NF5461-Insertion-1
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5461-Insertion-1
NF5461-Insertion-1
[»] chr4 (26 HSPs)
chr4 (411-968)||(10001675-10002234)
chr4 (326-368)||(37274460-37274502)
chr4 (326-368)||(23377989-23378031)
chr4 (326-368)||(37109352-37109394)
chr4 (323-368)||(11592151-11592196)
chr4 (319-366)||(8325373-8325420)
chr4 (326-368)||(7949455-7949497)
chr4 (326-368)||(19680789-19680831)
chr4 (326-368)||(38869801-38869843)
chr4 (326-368)||(46329197-46329239)
chr4 (319-368)||(32992645-32992694)
chr4 (320-357)||(44865378-44865415)
chr4 (319-360)||(46295138-46295179)
chr4 (326-367)||(49576895-49576936)
chr4 (320-368)||(39509103-39509151)
chr4 (326-365)||(7292799-7292838)
chr4 (321-368)||(37720210-37720257)
chr4 (317-360)||(38838838-38838881)
chr4 (326-368)||(2622396-2622438)
chr4 (326-368)||(8030205-8030247)
chr4 (323-365)||(16581729-16581771)
chr4 (290-368)||(19238542-19238620)
chr4 (326-368)||(28635729-28635771)
chr4 (326-368)||(31759659-31759701)
chr4 (330-359)||(14451751-14451780)
chr4 (328-365)||(51622521-51622558)
[»] chr7 (24 HSPs)
chr7 (317-368)||(22760896-22760947)
chr7 (319-367)||(19553487-19553535)
chr7 (326-368)||(26459411-26459453)
chr7 (319-368)||(38374593-38374642)
chr7 (321-360)||(31835233-31835272)
chr7 (433-479)||(12017209-12017255)
chr7 (326-368)||(23552151-23552193)
chr7 (326-368)||(30442521-30442563)
chr7 (326-368)||(43215217-43215259)
chr7 (315-368)||(45709698-45709751)
chr7 (328-368)||(7801213-7801253)
chr7 (323-363)||(9183189-9183229)
chr7 (317-368)||(20335823-20335874)
chr7 (320-359)||(29916803-29916842)
chr7 (321-368)||(43590940-43590987)
chr7 (321-368)||(48771971-48772018)
chr7 (326-368)||(5273591-5273633)
chr7 (326-368)||(7721402-7721444)
chr7 (326-368)||(17041013-17041055)
chr7 (326-368)||(39631877-39631919)
chr7 (331-368)||(5579240-5579277)
chr7 (319-360)||(18056769-18056810)
chr7 (323-368)||(20952147-20952192)
chr7 (321-362)||(42711997-42712038)
[»] chr5 (16 HSPs)
chr5 (326-365)||(34984842-34984881)
chr5 (326-366)||(18596002-18596042)
chr5 (326-365)||(14285197-14285236)
chr5 (326-368)||(16773840-16773882)
chr5 (326-368)||(39327091-39327133)
chr5 (319-368)||(84857-84906)
chr5 (326-363)||(43442234-43442271)
chr5 (326-362)||(25627096-25627132)
chr5 (326-365)||(7918470-7918509)
chr5 (337-368)||(30883210-30883241)
chr5 (326-368)||(17028265-17028307)
chr5 (326-363)||(87424-87461)
chr5 (321-366)||(3315250-3315295)
chr5 (331-368)||(4793094-4793131)
chr5 (319-368)||(16457843-16457892)
chr5 (319-368)||(31669019-31669067)
[»] chr2 (19 HSPs)
chr2 (321-368)||(29503304-29503351)
chr2 (326-368)||(42327396-42327438)
chr2 (319-368)||(37480108-37480157)
chr2 (320-368)||(39715025-39715073)
chr2 (317-368)||(28846724-28846775)
chr2 (319-366)||(41908632-41908679)
chr2 (326-368)||(4262303-4262345)
chr2 (326-368)||(16918579-16918621)
chr2 (326-368)||(42602587-42602629)
chr2 (323-360)||(13803536-13803573)
chr2 (321-362)||(17737620-17737661)
chr2 (326-362)||(21195677-21195713)
chr2 (321-368)||(23052519-23052566)
chr2 (326-368)||(12086130-12086172)
chr2 (326-368)||(12994377-12994419)
chr2 (326-368)||(19244142-19244184)
chr2 (330-368)||(33839265-33839303)
chr2 (319-368)||(6099513-6099561)
chr2 (319-368)||(21213802-21213851)
[»] chr8 (20 HSPs)
chr8 (318-368)||(3524394-3524444)
chr8 (326-364)||(22193365-22193403)
chr8 (317-368)||(968395-968446)
chr8 (321-368)||(19703483-19703530)
chr8 (326-368)||(3624613-3624655)
chr8 (326-368)||(11793522-11793564)
chr8 (326-368)||(11819809-11819851)
chr8 (326-368)||(16852373-16852415)
chr8 (326-368)||(27750763-27750805)
chr8 (317-362)||(396033-396078)
chr8 (319-368)||(2203525-2203574)
chr8 (326-366)||(28783095-28783135)
chr8 (319-363)||(36205233-36205277)
chr8 (326-365)||(33017250-33017289)
chr8 (330-368)||(6536553-6536591)
chr8 (326-368)||(18540331-18540373)
chr8 (330-368)||(26688898-26688936)
chr8 (326-368)||(29858050-29858092)
chr8 (326-368)||(44780115-44780157)
chr8 (326-363)||(11492074-11492111)
[»] chr6 (9 HSPs)
chr6 (328-368)||(23910114-23910154)
chr6 (326-368)||(10338175-10338217)
chr6 (326-368)||(20213074-20213116)
chr6 (326-368)||(22107097-22107139)
chr6 (326-368)||(33549137-33549179)
chr6 (326-368)||(6385895-6385937)
chr6 (326-368)||(12188304-12188346)
chr6 (323-368)||(28363970-28364015)
chr6 (331-368)||(31622997-31623034)
[»] scaffold0291 (1 HSPs)
scaffold0291 (320-363)||(2465-2508)
[»] chr1 (25 HSPs)
chr1 (326-365)||(36371506-36371545)
chr1 (326-368)||(6122827-6122869)
chr1 (326-368)||(15786321-15786363)
chr1 (326-363)||(2799900-2799937)
chr1 (326-363)||(33700774-33700811)
chr1 (326-362)||(3265963-3265999)
chr1 (319-359)||(19528321-19528361)
chr1 (326-358)||(24019066-24019098)
chr1 (326-362)||(38947473-38947509)
chr1 (317-368)||(952544-952595)
chr1 (326-365)||(1247149-1247188)
chr1 (326-365)||(4566584-4566623)
chr1 (321-368)||(16169974-16170021)
chr1 (326-368)||(8177183-8177225)
chr1 (330-368)||(9165200-9165238)
chr1 (326-368)||(10526856-10526898)
chr1 (326-368)||(11063589-11063631)
chr1 (320-366)||(52029932-52029978)
chr1 (319-368)||(31605842-31605891)
chr1 (331-360)||(32916809-32916838)
chr1 (319-368)||(39966126-39966175)
chr1 (319-360)||(43446004-43446045)
chr1 (319-360)||(45266875-45266916)
chr1 (326-359)||(51814536-51814569)
chr1 (323-368)||(52336772-52336817)
[»] scaffold0258 (1 HSPs)
scaffold0258 (326-368)||(15324-15366)
[»] scaffold0194 (1 HSPs)
scaffold0194 (317-363)||(13038-13084)
[»] scaffold0002 (2 HSPs)
scaffold0002 (323-365)||(94969-95011)
scaffold0002 (321-367)||(142187-142233)
[»] chr3 (31 HSPs)
chr3 (326-368)||(4222174-4222216)
chr3 (326-368)||(10445140-10445182)
chr3 (326-368)||(30311339-30311381)
chr3 (331-368)||(7975451-7975488)
chr3 (323-368)||(15048059-15048104)
chr3 (323-368)||(44743853-44743898)
chr3 (321-360)||(9345256-9345295)
chr3 (326-365)||(37788466-37788505)
chr3 (330-365)||(53412981-53413016)
chr3 (317-368)||(54990735-54990786)
chr3 (326-368)||(8075128-8075170)
chr3 (321-367)||(13164755-13164801)
chr3 (326-360)||(14186688-14186722)
chr3 (326-364)||(17765164-17765202)
chr3 (326-368)||(18316500-18316541)
chr3 (326-364)||(19066484-19066522)
chr3 (326-368)||(20501729-20501771)
chr3 (326-368)||(26481960-26482002)
chr3 (326-368)||(28703405-28703447)
chr3 (326-368)||(31520606-31520648)
chr3 (326-368)||(32651439-32651481)
chr3 (326-368)||(39253730-39253772)
chr3 (323-368)||(2667895-2667940)
chr3 (326-363)||(3427554-3427591)
chr3 (327-368)||(11612332-11612373)
chr3 (321-362)||(14339649-14339690)
chr3 (319-368)||(16900675-16900724)
chr3 (321-362)||(17108894-17108935)
chr3 (319-360)||(19716238-19716279)
chr3 (323-368)||(31788968-31789013)
chr3 (319-368)||(47236965-47237014)
[»] scaffold0180 (1 HSPs)
scaffold0180 (326-365)||(19963-20002)
[»] scaffold0126 (1 HSPs)
scaffold0126 (323-362)||(25345-25384)
[»] scaffold0299 (1 HSPs)
scaffold0299 (326-368)||(11561-11603)
[»] scaffold0063 (1 HSPs)
scaffold0063 (323-360)||(35387-35424)


Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 411 - 968
Target Start/End: Complemental strand, 10002234 - 10001675
Alignment:
Q  411 taaattttctaaatgtatgtcataaaattttaaaatttccattatttttatcgagaaaagtgaacagacgaccatgttagcagtttcttataacctgaat 510  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10002234 taaattttctaaatgtatggcataaaattttaaaatttccattatttttatcgagaaaagtgaacagacgaccatgttagcagtttcttataacctgaat 10002135  T
Q  511 aagcagcttagtttttgttgaattgagctttgaattttgattgttaaaacttgaaaaaattgaatgattagtgattaaagtcatacaagttgaacaatta 610  Q
    |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10002134 aagcagcttagtttttgttgaattgacctttgaattttcattggtaaaacttgaaaaaattgaatgattagtgattaaagtcatacaagttgaacaatta 10002035  T
Q  611 ccgtcaaatttaacgaacttatagtgtagaattgtgaaggaataagaacttatcaagccttatttttaactcatctctgtttattttgtattgcacattg 710  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10002034 ccgtcaaatttaacgaacttatagtgtagaattgtgaaggaataagaacttatcaagccttatttttaactcatctctgtttgttttgtattgcacattg 10001935  T
Q  711 tacagtgctttgaattggtggaccatcatgtccaacttttcttctcaaaaatagctcgaatgatgcctgcagaactctgtgaaaagtaccacctttgtga 810  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10001934 tacagtgctttgaattggtggaccatcatgttcaacttttcttctcaaaaatagctcgaatgatgcctgcagaactctgtgaaaagtaccacctttgtga 10001835  T
Q  811 gtctgcaacgatttcttcacaggttcatggaaatagttgtggcttttgtaaagatactgttgcagaattattggttgagttgaatgatcctgaaactaag 910  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10001834 gtctgcaacgatttcttcacaggttcatggaaatagttgtggcttttgtaaagatactgttgcagaattattagttgagttgaatgatcctgaaactaag 10001735  T
Q  911 gttagtgattttactgctctacatta-cccttcttactatgagcatt-gagattcgtatc 968  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||    
T  10001734 gttagtgattttactgctctacattacccctccttaatatgagcattagagattcgtatc 10001675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 37274460 - 37274502
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37274460 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 37274502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 23378031 - 23377989
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  23378031 aatcgaacctgagaccttgaggaggagcacactcccaggtccc 23377989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 37109352 - 37109394
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  37109352 aatcgaacctgagaccttgaggaggagcacactcccaggtccc 37109394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 11592151 - 11592196
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||    
T  11592151 gataatcgaacctaagacctggaggaggagcacactctcaggtccc 11592196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 8325373 - 8325420
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtc 366  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  8325373 cggggagaatcgaacctaagaccttgaggatgagcacactccaaggtc 8325420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 7949455 - 7949497
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  7949455 aatcgaacctgagaccttgaggaggagcacactccgaggtccc 7949497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 19680789 - 19680831
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  19680789 aatcgaacctaagaccttgaggaagagcacactcccaagtccc 19680831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 38869843 - 38869801
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  38869843 aatcgaacctgagaccttgaggaggagcacactcccagatccc 38869801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 46329239 - 46329197
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  46329239 aatcgaacctgataccttgaggaggagcacactcccaggtccc 46329197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 32992694 - 32992645
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||| | |||||||||||||||||||||||| |||||||    
T  32992694 cggggagaatcgaacttgagaccttgaggaggagcacactccaaggtccc 32992645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 44865415 - 44865378
Alignment:
Q  320 ggggataatcgaacctaagaccttgaggaggagcacac 357  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  44865415 ggggagaatcgaacctaagaccttgaggaggagcacac 44865378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 46295179 - 46295138
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcc 360  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  46295179 cggggagaatcgaacctgagaccttgaggaggagcacactcc 46295138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 49576895 - 49576936
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtcc 367  Q
    |||||||||| |||||||||||||||||||||||||| ||||    
T  49576895 aatcgaacctgagaccttgaggaggagcacactcccaagtcc 49576936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 39509151 - 39509103
Alignment:
Q  320 ggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||| |||||||||| |||||| |||||||||||||||||||| ||||    
T  39509151 ggggagaatcgaacctgagacctcgaggaggagcacactcccagatccc 39509103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 7292799 - 7292838
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  7292799 aatcgaacctgagactttgaggaggagcacactcccaggt 7292838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 37720210 - 37720257
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| ||||||||||  ||||||||||||| |||||||||||||||||    
T  37720210 gggagaatcgaacctgggaccttgaggaggggcacactcccaggtccc 37720257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 38838881 - 38838838
Alignment:
Q  317 atcggggataatcgaacctaagaccttgaggaggagcacactcc 360  Q
    ||||| || ||||||||||||||||||||||||||||| |||||    
T  38838881 atcggagagaatcgaacctaagaccttgaggaggagcatactcc 38838838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 2622396 - 2622438
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||| | |||||||||||||||||||||||||    
T  2622396 aatcgaacctgagacatggaggaggagcacactcccaggtccc 2622438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 8030205 - 8030247
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||| | |||||||||||||||||||||||||| |||||    
T  8030205 aatcgaacttgagaccttgaggaggagcacactcccaagtccc 8030247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 16581771 - 16581729
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
T  16581771 gataatagaacctgagaccttgaggaggagcagactcccaggt 16581729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 290 - 368
Target Start/End: Original strand, 19238542 - 19238620
Alignment:
Q  290 aagctgaattagctcccccaaggttgtatcggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||| ||||||| | |||||  | ||| |||||| |||||||||  |||||| ||||||||||||||||||| |||||    
T  19238542 aagctaaattagcccacccaaattggtaccggggagaatcgaacccgagacctcgaggaggagcacactcccaagtccc 19238620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 28635771 - 28635729
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||||||||||  ||||||||||||||||||| ||||    
T  28635771 aatcgaacctaagacctccaggaggagcacactcccagatccc 28635729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 31759659 - 31759701
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||| || |||||||||||||||||||||||||| |||||    
T  31759659 aatcgaatctgagaccttgaggaggagcacactcccaagtccc 31759701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 359
Target Start/End: Original strand, 14451751 - 14451780
Alignment:
Q  330 gaacctaagaccttgaggaggagcacactc 359  Q
    ||||||||||||||||||||||||||||||    
T  14451751 gaacctaagaccttgaggaggagcacactc 14451780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 51622558 - 51622521
Alignment:
Q  328 tcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  51622558 tcgaacctgagaccttgaggaggagcacactccaaggt 51622521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 22760947 - 22760896
Alignment:
Q  317 atcggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  22760947 atcggggagaatcgaacctgagaccttgaggaggagcacactcccaggtccc 22760896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 19553535 - 19553487
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtcc 367  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  19553535 cggggagaattgaacctaagaccttgaggaggagcacactcccaggtcc 19553487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 26459411 - 26459453
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  26459411 aatcgaacctgagaccttgaggaggagcacactcccaggtccc 26459453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 38374593 - 38374642
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  38374593 cggggagaatcgaacctaagaccttgaggaggagcacactctaaggtccc 38374642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 360
Target Start/End: Complemental strand, 31835272 - 31835233
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcc 360  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  31835272 gggataatcgaacctgagaccttgaggaggagcacactcc 31835233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 433 - 479
Target Start/End: Original strand, 12017209 - 12017255
Alignment:
Q  433 taaaattttaaaatttccattatttttatcgagaaaagtgaacagac 479  Q
    ||||||| || || |||||||||||||||||||||||||||||||||    
T  12017209 taaaattgtataacttccattatttttatcgagaaaagtgaacagac 12017255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 23552193 - 23552151
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||| | ||||||||||||||||||||||||||||||||    
T  23552193 aatcgaacttgagaccttgaggaggagcacactcccaggtccc 23552151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 30442563 - 30442521
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||||||||||||| |||||||||||||    
T  30442563 aatcgaacctcagaccttgaggaggagcaaactcccaggtccc 30442521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 43215259 - 43215217
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  43215259 aatcgaacctgagaccttgaggaggagcacactccgaggtccc 43215217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 45709698 - 45709751
Alignment:
Q  315 gtatcggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||| ||| ||||    
T  45709698 gtatcggagataatcgaacctgagacctcgaggaggagcacactctcagatccc 45709751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 7801253 - 7801213
Alignment:
Q  328 tcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  7801253 tcgaacctgagaccttgaagaggagcacactcccaggtccc 7801213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 9183189 - 9183229
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccag 363  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  9183189 gataatcgaacctgagactttgaggaggagcacactcccag 9183229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 20335823 - 20335874
Alignment:
Q  317 atcggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||| || |||||||||| |||||| ||||||||||||||||||| |||||    
T  20335823 atcggtgagaatcgaacctgagacctcgaggaggagcacactcccaagtccc 20335874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 29916803 - 29916842
Alignment:
Q  320 ggggataatcgaacctaagaccttgaggaggagcacactc 359  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  29916803 ggggagaatcgaacctgagaccttgaggaggagcacactc 29916842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 43590987 - 43590940
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| |||||||||| |||| ||||||||||||||||||||| |||||    
T  43590987 gggagaatcgaacctgagacattgaggaggagcacactcccaagtccc 43590940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 48772018 - 48771971
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||||||||||| ||||||  ||||||||||||||||||| ||||    
T  48772018 gggataatcgaacctgagacctcaaggaggagcacactcccagatccc 48771971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 5273591 - 5273633
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| |||||||||||||||||||||||||||||  |||||||    
T  5273591 aatcaaacctaagaccttgaggaggagcacactctaaggtccc 5273633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 7721444 - 7721402
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||| | |||||||||||||||| |||||||||||||||    
T  7721444 aatcgaacatgagaccttgaggaggagtacactcccaggtccc 7721402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 17041013 - 17041055
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||||||||||||||||| |||| ||||    
T  17041013 aatcgaacctgagaccttgaggaggagcacacttccagatccc 17041055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 39631919 - 39631877
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||||||||||||  |||||||||||||    
T  39631919 aatcgaacctgagaccttgaggaggagcttactcccaggtccc 39631877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 5579240 - 5579277
Alignment:
Q  331 aacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  5579240 aacctgagaccttgaggaggagcacactccaaggtccc 5579277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 18056769 - 18056810
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcc 360  Q
    |||||| |||||||||| ||||||| ||||||||||||||||    
T  18056769 cggggagaatcgaacctgagaccttcaggaggagcacactcc 18056810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 20952147 - 20952192
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| || |||  |||||||||||||||||||||||||||    
T  20952147 gataatcgaatctgagattttgaggaggagcacactcccaggtccc 20952192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 42712038 - 42711997
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactccca 362  Q
    |||| |||||||| | ||||||||||||||||||||||||||    
T  42712038 gggagaatcgaacatgagaccttgaggaggagcacactccca 42711997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 34984881 - 34984842
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34984881 aatcgaacctaagaccttgaggaggagcacactcccaggt 34984842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 18596002 - 18596042
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtc 366  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  18596002 aatcgaacctaagaccttgaggaggagcacattcccaggtc 18596042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 14285236 - 14285197
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  14285236 aatcgaacctgagaccttgaggaggagcacactcccaggt 14285197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 16773882 - 16773840
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  16773882 aatcgaacctgagacctcgaggaggagcacactcccaggtccc 16773840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 39327091 - 39327133
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||| ||||||||||||||||||||||||||||| |||||    
T  39327091 aatcgaagctaagaccttgaggaggagcacactcccatgtccc 39327133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 84906 - 84857
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||| | ||||||||||||||||||||||||||| ||||    
T  84906 cggggagaatcgaacttgagaccttgaggaggagcacactcccagatccc 84857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 43442271 - 43442234
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccag 363  Q
    |||||||||| |||||||||||||||||||||||||||    
T  43442271 aatcgaacctgagaccttgaggaggagcacactcccag 43442234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 25627132 - 25627096
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactccca 362  Q
    |||||||||| ||||||||||||||||||||||||||    
T  25627132 aatcgaacctgagaccttgaggaggagcacactccca 25627096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 7918470 - 7918509
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  7918470 aatcgaacctaagaccttgaggaggagtgcactcccaggt 7918509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 368
Target Start/End: Original strand, 30883210 - 30883241
Alignment:
Q  337 agaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||||||||||||||||||||||||||||    
T  30883210 agaccttgaggaggagcacactcccaggtccc 30883241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 17028265 - 17028307
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| ||||| |||||||||||||||||||||||||| |||||    
T  17028265 aatcaaacctgagaccttgaggaggagcacactcccaagtccc 17028307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 87424 - 87461
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccag 363  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  87424 aatcaaacctgagaccttgaggaggagcacactcccag 87461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 3315295 - 3315250
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcccaggtc 366  Q
    |||| |||||||||| ||||||||||||||||| |||||| |||||    
T  3315295 gggagaatcgaacctgagaccttgaggaggagcgcactccaaggtc 3315250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 4793094 - 4793131
Alignment:
Q  331 aacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  4793094 aacctgagacctcgaggaggagcacactcccaggtccc 4793131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 16457892 - 16457843
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| ||| |||| | |||||||||||||||||||||||| |||||||    
T  16457892 cggggagaattgaacatgagaccttgaggaggagcacactccaaggtccc 16457843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 31669019 - 31669067
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||||||||||||||| |||||||| ||||| |||||||    
T  31669019 cggggagaatcgaacctaagaccttga-gaggagcagactccaaggtccc 31669067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 29503351 - 29503304
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  29503351 gggagaatcgaacctgagaccttgaggaggagcacactcccaggtccc 29503304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 42327396 - 42327438
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  42327396 aatcgaacctgagaccttgaggaggagcacactcccaggtccc 42327438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 37480157 - 37480108
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  37480157 cggggagaatcgaacctgagaccttgaggaggagcacactctcaggtccc 37480108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 39715073 - 39715025
Alignment:
Q  320 ggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  39715073 ggggagaatcgaacctgagacctcgaggaggagcacactcccaggtccc 39715025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 28846775 - 28846724
Alignment:
Q  317 atcggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||| ||||||||||||| |||| | |||||||||||||||||||||||||    
T  28846775 atcggtgataatcgaacctgagacatcgaggaggagcacactcccaggtccc 28846724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 41908632 - 41908679
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtc 366  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||    
T  41908632 cggggataatcgaacttgagaccttgaggaggagcacactccaaggtc 41908679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 4262303 - 4262345
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  4262303 aatcgaacctgagaccttgaggaggagcacactgccaggtccc 4262345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 16918579 - 16918621
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| ||||||||||||||||||||||||||||||||| ||||    
T  16918579 aatccaacctaagaccttgaggaggagcacactcccagatccc 16918621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 42602629 - 42602587
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  42602629 aatcaaacctaagaccttgagaaggagcacactcccaggtccc 42602587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 13803573 - 13803536
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcc 360  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  13803573 gataatcgaacctgagaccttgaggaggagcacactcc 13803536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 17737620 - 17737661
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactccca 362  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  17737620 gggataatcgaacatgagaccttgaggaggagcacactccca 17737661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 21195677 - 21195713
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactccca 362  Q
    |||||||||| ||||||||||||||||||||||||||    
T  21195677 aatcgaacctgagaccttgaggaggagcacactccca 21195713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 23052519 - 23052566
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| |||||||||| ||||||||||||| |||||||||||| |||||    
T  23052519 gggagaatcgaacctgagaccttgaggagaagcacactcccaagtccc 23052566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 12086130 - 12086172
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||  |||||||||||||||||||||| |||||||||    
T  12086130 aatcgaacccgagaccttgaggaggagcacacttccaggtccc 12086172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 12994377 - 12994419
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||| | ||||||| ||||||||||||||||||||||||    
T  12994377 aatcgaacttgagaccttaaggaggagcacactcccaggtccc 12994419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 19244184 - 19244142
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||| |||||||||||||| ||||||||    
T  19244184 aatcgaacctgagaccttggggaggagcacactctcaggtccc 19244142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 33839265 - 33839303
Alignment:
Q  330 gaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  33839265 gaacctgagaccttgaggaggagcacactcccatgtccc 33839303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 6099513 - 6099561
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||||| |||||||||| ||||||||||||| |||||||    
T  6099513 cggggagaatcgaacctgagaccttgag-aggagcacactccaaggtccc 6099561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 21213851 - 21213802
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||||| ||||||  ||||||| ||||||||||||||||    
T  21213851 cggggagaatcgaacctgagacctcaaggaggaacacactcccaggtccc 21213802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 3524394 - 3524444
Alignment:
Q  318 tcggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  3524394 tcggggagaattgaacctaagaccttgaggaggagcacactccaaggtccc 3524444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 364
Target Start/End: Original strand, 22193365 - 22193403
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccagg 364  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22193365 aatcgaacctaagaccttgaggaggagcacactcccagg 22193403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 968446 - 968395
Alignment:
Q  317 atcggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||| || |||||||||| |||||| |||||||||||||||||||||||||    
T  968446 atcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtccc 968395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 19703483 - 19703530
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  19703483 gggagaatcgaacctgagaccttgaggaggagcacactctcaggtccc 19703530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 3624655 - 3624613
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  3624655 aatcgaacctgagaccttgaagaggagcacactcccaggtccc 3624613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 11793522 - 11793564
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  11793522 aatcaaacctaagaccttgaggaggagcacactccaaggtccc 11793564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 11819851 - 11819809
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  11819851 aatcgaacctgagaccttgaggaggagcacactcccaagtccc 11819809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 16852415 - 16852373
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  16852415 aatcgaacctgagacctcgaggaggagcacactcccaggtccc 16852373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 27750805 - 27750763
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  27750805 aatcgaacctgagaccttgaggaggagcacactcccaagtccc 27750763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 396078 - 396033
Alignment:
Q  317 atcggggataatcgaacctaagaccttgaggaggagcacactccca 362  Q
    ||||||||||||||||| |||||  |||||||||||||||||||||    
T  396078 atcggggataatcgaacataagatgttgaggaggagcacactccca 396033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 2203574 - 2203525
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| ||| || ||| ||||||||||||||||||||||||||||||||    
T  2203574 cggggagaattgaccctgagaccttgaggaggagcacactcccaggtccc 2203525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 28783135 - 28783095
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtc 366  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  28783135 aatcgaacatgagaccttgaggaggagcacactcccaggtc 28783095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 36205277 - 36205233
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccag 363  Q
    |||||| |||||||| | |||||||||||||||||||||||||||    
T  36205277 cggggagaatcgaacatgagaccttgaggaggagcacactcccag 36205233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 33017289 - 33017250
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  33017289 aatcgaacctgagaccttgaggaggagcacacttccaggt 33017250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 6536591 - 6536553
Alignment:
Q  330 gaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  6536591 gaacctgagaccttgaggaggagcacactcctaggtccc 6536553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 18540373 - 18540331
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||||||| || |||||||||||||||    
T  18540373 aatcgaacctgagaccttgaggagaagtacactcccaggtccc 18540331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 26688936 - 26688898
Alignment:
Q  330 gaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  26688936 gaacctgagaccttgaggaggagcacactccaaggtccc 26688898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 29858050 - 29858092
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||| |||||||||||||||||| ||||||    
T  29858050 aatcgaacctgagacctcgaggaggagcacactccctggtccc 29858092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 44780115 - 44780157
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| ||||| |||||||||||||||||||||||||| |||||    
T  44780115 aatcaaacctgagaccttgaggaggagcacactcccaagtccc 44780157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 11492074 - 11492111
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccag 363  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  11492074 aatcgaacctaagacctcgagaaggagcacactcccag 11492111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 23910114 - 23910154
Alignment:
Q  328 tcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  23910114 tcgaacctgagaccttgaggaggagcacactcccaggtccc 23910154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 10338175 - 10338217
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  10338175 aatcgaacctgagaccttgaggaggagcacactcctaggtccc 10338217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 20213116 - 20213074
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  20213116 aatcgaacctgagacattgaggaggagcacactcccaggtccc 20213074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 22107139 - 22107097
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  22107139 aatcgaacctgagacattgaggaggagcacactcccaggtccc 22107097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 33549179 - 33549137
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  33549179 aatcgaacctgagacctcgaggaggagcacactcccaggtccc 33549137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 6385937 - 6385895
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||| |||||||||||| |||||||||||    
T  6385937 aatcgaacctgagaccttaaggaggagcacagtcccaggtccc 6385895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 12188304 - 12188346
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||| | | ||||||||||||||||||||||||||||||    
T  12188304 aatcgaacttgaaaccttgaggaggagcacactcccaggtccc 12188346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 28364015 - 28363970
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| || ||||||||||||||||||||||| ||| ||||    
T  28364015 gataatcgaatctgagaccttgaggaggagcacactcgcagatccc 28363970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 31622997 - 31623034
Alignment:
Q  331 aacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  31622997 aacctgagacctcgaggaggagcacactcccaggtccc 31623034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 363
Target Start/End: Original strand, 2465 - 2508
Alignment:
Q  320 ggggataatcgaacctaagaccttgaggaggagcacactcccag 363  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  2465 ggggagaatcgaacctgagaccttgaggaggagcacactcccag 2508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 36371545 - 36371506
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  36371545 aatcgaacctcagaccttgaggaggagcacactcccaggt 36371506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 6122869 - 6122827
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  6122869 aatcgaacctgagaccttgaggaggagcacactcccaagtccc 6122827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 15786321 - 15786363
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  15786321 aatcgaacctgagaccttgaggaggagcacactcccagatccc 15786363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 2799937 - 2799900
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccag 363  Q
    |||||||||| |||||||||||||||||||||||||||    
T  2799937 aatcgaacctgagaccttgaggaggagcacactcccag 2799900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 33700774 - 33700811
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccag 363  Q
    |||||||||| |||||||||||||||||||||||||||    
T  33700774 aatcgaacctgagaccttgaggaggagcacactcccag 33700811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 3265999 - 3265963
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactccca 362  Q
    |||||||||| ||||||||||||||||||||||||||    
T  3265999 aatcgaacctgagaccttgaggaggagcacactccca 3265963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 19528321 - 19528361
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactc 359  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  19528321 cggggagaatcgaacctgagaccttgaggaggagcacactc 19528361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 24019098 - 24019066
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacact 358  Q
    |||||||||||||||||||||||||||||||||    
T  24019098 aatcgaacctaagaccttgaggaggagcacact 24019066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 38947473 - 38947509
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactccca 362  Q
    |||||||||| ||||||||||||||||||||||||||    
T  38947473 aatcgaacctgagaccttgaggaggagcacactccca 38947509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 952595 - 952544
Alignment:
Q  317 atcggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||| |||| ||||| |||| ||||||| |||||||||||||||||||    
T  952595 atcggggagaatctaacctgagactttgaggatgagcacactcccaggtccc 952544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 1247188 - 1247149
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  1247188 aatcgaacctgagaccttgaggaggagtacactcccaggt 1247149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 4566623 - 4566584
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  4566623 aatcgaacctgagaccctgaggaggagcacactcccaggt 4566584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 368
Target Start/End: Original strand, 16169974 - 16170021
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| |||||||||| | ||||||||||||| ||||||||||||||||    
T  16169974 gggagaatcgaacctgaaaccttgaggaggaacacactcccaggtccc 16170021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 8177183 - 8177225
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| | ||||||||||||||||||||||||| ||||    
T  8177183 aatcgaacctgaaaccttgaggaggagcacactcccagatccc 8177225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 9165200 - 9165238
Alignment:
Q  330 gaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  9165200 gaacctgagactttgaggaggagcacactcccaggtccc 9165238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 10526898 - 10526856
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||| || |||||||||||||||||| |||||||||||||    
T  10526898 aatcgaatctgagaccttgaggaggagcaaactcccaggtccc 10526856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 11063631 - 11063589
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||||||||||||||||||| ||||||  ||||||||    
T  11063631 aatcgaacctaagaccttgaggaggaacacactttcaggtccc 11063589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 52029932 - 52029978
Alignment:
Q  320 ggggataatcgaacctaagaccttgaggaggagcacactcccaggtc 366  Q
    ||||| |||||||||| |||||||||| ||||||||||||| |||||    
T  52029932 ggggagaatcgaacctgagaccttgagaaggagcacactcctaggtc 52029978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 31605842 - 31605891
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||| | |||||||||||||||||||||| | |||||||    
T  31605842 cggggagaatcgaacttgagaccttgaggaggagcacacttcaaggtccc 31605891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 32916809 - 32916838
Alignment:
Q  331 aacctaagaccttgaggaggagcacactcc 360  Q
    ||||||||||||||||||||||||||||||    
T  32916809 aacctaagaccttgaggaggagcacactcc 32916838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 39966175 - 39966126
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| || ||||||| |||||||||||||||| ||||||| |||||||    
T  39966175 cggggagaaacgaacctgagaccttgaggaggagtacactccaaggtccc 39966126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 43446045 - 43446004
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcc 360  Q
    |||||| |||||||| | ||||||||||||||||||||||||    
T  43446045 cggggagaatcgaacatgagaccttgaggaggagcacactcc 43446004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 45266916 - 45266875
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcc 360  Q
    |||||| |||||||||| |||||||||||||||||| |||||    
T  45266916 cggggagaatcgaacctgagaccttgaggaggagcaaactcc 45266875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 326 - 359
Target Start/End: Complemental strand, 51814569 - 51814536
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactc 359  Q
    |||||||||| |||||||||||||||||||||||    
T  51814569 aatcgaacctgagaccttgaggaggagcacactc 51814536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 52336772 - 52336817
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||||||||| ||| ||| ||||||||||||||||||| ||||    
T  52336772 gataatcgaacctgagatcttaaggaggagcacactcccagatccc 52336817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 15324 - 15366
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  15324 aatcgaacctgagacctcgaggaggagcacactcccaggtccc 15366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 13038 - 13084
Alignment:
Q  317 atcggggataatcgaacctaagaccttgaggaggagcacactcccag 363  Q
    ||||| || |||||||||| |||||||||||||||||||||||||||    
T  13038 atcggagagaatcgaacctgagaccttgaggaggagcacactcccag 13084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 94969 - 95011
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  94969 gataattgaacctgagaccttgaggaggagcacactcccaggt 95011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 142233 - 142187
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcccaggtcc 367  Q
    |||| ||| |||||||||||||||||||| |||||||||| ||||||    
T  142233 gggagaattgaacctaagaccttgaggagtagcacactccaaggtcc 142187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 4222216 - 4222174
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  4222216 aatcgaacctaagactttgaggaggagcacactcccagatccc 4222174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 10445140 - 10445182
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  10445140 aatcgaacctgagacctcgaggaggagcacactcccaggtccc 10445182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 30311381 - 30311339
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  30311381 aatcgaacctgagaccttgaggaggagcacactcccagatccc 30311339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 7975488 - 7975451
Alignment:
Q  331 aacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  7975488 aacctaagaccttgaggaggagcacactcccagatccc 7975451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 15048059 - 15048104
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||    
T  15048059 gataatcgaacctgagaccttgaggaggagcacattcccagatccc 15048104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 44743853 - 44743898
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||    
T  44743853 gataatcgaacctgagacctcgaggaggagcacactcccagatccc 44743898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 360
Target Start/End: Original strand, 9345256 - 9345295
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcc 360  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  9345256 gggagaatcgaacctaagacctttaggaggagcacactcc 9345295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 37788466 - 37788505
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  37788466 aatcgaacctgagaccttgaggaggagcacactcctaggt 37788505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 365
Target Start/End: Complemental strand, 53413016 - 53412981
Alignment:
Q  330 gaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||| |||||||||||||||||||||||||||||    
T  53413016 gaacctgagaccttgaggaggagcacactcccaggt 53412981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 54990786 - 54990735
Alignment:
Q  317 atcggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| ||| |||||||||| ||||||||||||||||||| |||| |||||||    
T  54990786 atcgaggagaatcgaacctgagaccttgaggaggagcacgctccaaggtccc 54990735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 8075128 - 8075170
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| | |||||||||||||||||||||||| |||||    
T  8075128 aatcgaacctgaaaccttgaggaggagcacactcccaagtccc 8075170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 321 - 367
Target Start/End: Original strand, 13164755 - 13164801
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactcccaggtcc 367  Q
    |||| ||| |||||||||||||||||||| |||||||||| ||||||    
T  13164755 gggagaattgaacctaagaccttgaggagtagcacactccaaggtcc 13164801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 14186722 - 14186688
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcc 360  Q
    |||||||||| ||||||||||||||||||||||||    
T  14186722 aatcgaacctgagaccttgaggaggagcacactcc 14186688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 17765202 - 17765164
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccagg 364  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  17765202 aatcgaacctgagatcttgaggaggagcacactcccagg 17765164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 18316500 - 18316541
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  18316500 aatcgaacctaagaccttga-gaggagcacactccaaggtccc 18316541  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 19066522 - 19066484
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccagg 364  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  19066522 aatcgaacctgagatcttgaggaggagcacactcccagg 19066484  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 20501771 - 20501729
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||    
T  20501771 aatcgaacctgagaccttaaggaggagcacactctcaggtccc 20501729  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 26482002 - 26481960
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||||| || |||||||||||||||||| ||||||||    
T  26482002 aatcgaacctaaaactttgaggaggagcacactctcaggtccc 26481960  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 28703405 - 28703447
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||    
T  28703405 aatcgaacctgagaccttgaagaggagcacactcccagatccc 28703447  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 31520606 - 31520648
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||| |||||||||||| |||||||||||||||||||| ||||    
T  31520606 aatcaaacctaagacctcgaggaggagcacactcccagatccc 31520648  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 32651439 - 32651481
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||| || ||| ||||||||||||||||||||||||||||    
T  32651439 aatcgaatctgagatcttgaggaggagcacactcccaggtccc 32651481  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 39253772 - 39253730
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||    
T  39253772 aatcgaacctgagaccttgaagaggagcacactcccagatccc 39253730  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 2667940 - 2667895
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  2667940 gataatcgaacctgagacctcgaggaagagcacactcccagatccc 2667895  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 3427554 - 3427591
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccag 363  Q
    ||||||| || |||||||||||||||||||||||||||    
T  3427554 aatcgaatctgagaccttgaggaggagcacactcccag 3427591  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 11612373 - 11612332
Alignment:
Q  327 atcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||    
T  11612373 atcgaacctgagaccttaaggaggagcacactcccagctccc 11612332  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 14339690 - 14339649
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactccca 362  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  14339690 gggagaatcgaacctgagacattgaggaggagcacactccca 14339649  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 16900675 - 16900724
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||| | ||||||||| |||||||||||||| |||||||    
T  16900675 cggggagaatcgaacatgagaccttgacgaggagcacactccaaggtccc 16900724  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 17108894 - 17108935
Alignment:
Q  321 gggataatcgaacctaagaccttgaggaggagcacactccca 362  Q
    |||| |||| ||||| ||||||||||||||||||||||||||    
T  17108894 gggagaatcaaacctgagaccttgaggaggagcacactccca 17108935  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 19716279 - 19716238
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcc 360  Q
    |||||| |||||||||  ||||||||||||||||||||||||    
T  19716279 cggggagaatcgaaccagagaccttgaggaggagcacactcc 19716238  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 323 - 368
Target Start/End: Original strand, 31788968 - 31789013
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    ||||||| ||||||| |||| |||||||||||||||||||| ||||    
T  31788968 gataatcaaacctaaaacctcgaggaggagcacactcccagatccc 31789013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 47236965 - 47237014
Alignment:
Q  319 cggggataatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||| |||||||| | ||||||||| ||||||||||||||| ||||||    
T  47236965 cggggagaatcgaacatgagaccttgaagaggagcacactcccgggtccc 47237014  T

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Target: scaffold0180 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 19963 - 20002
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggt 365  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  19963 aatcgaacctgagaccttgaggaggagcatactcccaggt 20002  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 362
Target Start/End: Original strand, 25345 - 25384
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactccca 362  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  25345 gataatcgaacctgagaccttgagaaggagcacactccca 25384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 11603 - 11561
Alignment:
Q  326 aatcgaacctaagaccttgaggaggagcacactcccaggtccc 368  Q
    |||||||||| |||||| |||||||||||||||||||| ||||    
T  11603 aatcgaacctgagacctcgaggaggagcacactcccagatccc 11561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 35387 - 35424
Alignment:
Q  323 gataatcgaacctaagaccttgaggaggagcacactcc 360  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  35387 gataatcgaacttaagaccttgaggaggagcatactcc 35424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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