View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461-Insertion-10 (Length: 500)
Name: NF5461-Insertion-10
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461-Insertion-10 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Original strand, 42320428 - 42320905
Alignment:
| Q |
8 |
atgatgttgatgcatattacaaagttcggtcaacgaatcttg-gattctaacctgggactctcatagacctttgtt-ataatccaaggggctttagtgag |
105 |
Q |
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| T |
42320428 |
atgatgttgatgcatattacaaagttcggtcaacgaatcttaagattctaacctgagactctcatagacctttgtttataatccaaggggctttagtgag |
42320527 |
T |
|
| Q |
106 |
aggagacaccttaaaacacacatgttgcaaagacgttaaaaataacattgattgagaatgtaaccttgatctcgtaagcaacaaaataccgctgaaaaaa |
205 |
Q |
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| T |
42320528 |
aggagacaccttaaaac-cacatgttgcaaagacgttaaaaataacattgattgaaaatgtaaccttgatctcataagcaccaaa-taccaatgaaaaaa |
42320625 |
T |
|
| Q |
206 |
ctagtcgtttcaactctagcaacaccatcgagcccaagcaatcaatgactttatatacacgagcaccactaggacagggttctgataaagcaagaaggct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
42320626 |
ctagtcgtttcaactctagcaacaccatcgagcccaagcaatcaatgactttatatacacgagcaccactaggacatggttatgataaagcaagaaggct |
42320725 |
T |
|
| Q |
306 |
cagattatggggacgagttatatcacaattcacaaatgtaaccaggaaaacgacacccacctgcacctttgcagttccaaataagatgattcattaatac |
405 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42320726 |
tagcttatgaggacgagttatatcacaattcacaaatgtaaccaggaaaacgacacccacctgcacctttgcagttccaaataagatgattcattaatac |
42320825 |
T |
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| Q |
406 |
acaataacaaacaatgggacaactgataactggatcgtgggggcgtatattggtcattttcagaatccatattttcatgata |
487 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42320826 |
acaataacaaacagtgggacaactg--aactggatcgtgggggcgtatattggtcattttcagaatccatattttcatgata |
42320905 |
T |
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