View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5461-Insertion-13 (Length: 370)

Name: NF5461-Insertion-13
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5461-Insertion-13
NF5461-Insertion-13
[»] chr1 (7 HSPs)
chr1 (102-370)||(7583275-7583543)
chr1 (8-67)||(7583579-7583638)
chr1 (267-364)||(7097868-7097962)
chr1 (114-228)||(42747589-42747711)
chr1 (273-313)||(21516785-21516825)
chr1 (181-222)||(3121424-3121465)
chr1 (274-310)||(31117863-31117899)
[»] chr5 (3 HSPs)
chr5 (102-228)||(32882703-32882830)
chr5 (289-367)||(17981321-17981401)
chr5 (318-360)||(30202553-30202595)
[»] chr7 (3 HSPs)
chr7 (102-225)||(28175551-28175675)
chr7 (181-227)||(18654737-18654783)
chr7 (181-221)||(10097322-10097362)
[»] chr3 (8 HSPs)
chr3 (103-228)||(43822510-43822636)
chr3 (245-303)||(34778135-34778194)
chr3 (102-147)||(37334552-37334597)
chr3 (190-266)||(44560128-44560204)
chr3 (102-148)||(1384248-1384294)
chr3 (102-144)||(13799996-13800038)
chr3 (102-147)||(32582511-32582556)
chr3 (182-222)||(35682500-35682540)
[»] chr4 (6 HSPs)
chr4 (165-228)||(13615247-13615310)
chr4 (134-233)||(21501594-21501694)
chr4 (165-233)||(25885955-25886023)
chr4 (106-148)||(17425642-17425684)
chr4 (104-144)||(20435493-20435533)
chr4 (147-227)||(39276338-39276418)
[»] scaffold0040 (1 HSPs)
scaffold0040 (102-228)||(49874-49994)
[»] chr6 (1 HSPs)
chr6 (148-221)||(1288292-1288365)
[»] chr2 (1 HSPs)
chr2 (187-219)||(36625959-36625991)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 102 - 370
Target Start/End: Complemental strand, 7583543 - 7583275
Alignment:
Q  102 agattgcagggataaaattgagataaaaagtgaaaagttataagcttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaact 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583543 agattgcagggataaaattgagataaaaagtgaaaagttataagcttaagctacttgaacttacttatcaaataacacaataagctcataaaaataaact 7583444  T
Q  202 ataaactcgtgagaaaatgacagttacgaaatttgnnnnnnnnagtcatatgaacttataagttaataaaatataaaccacaagctcaaatatgtgtctt 301  Q
    |||| ||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583443 ataagctcgtgagaaaatgacagttacgaaatatgttttttttagtcatatgaacttataagttaataaaatataaaccacaagctcaaatatgtgtctt 7583344  T
Q  302 accaaacagacctaaaagaaacacaatcaaaaggatggagggagaataaagagcctacctgttcaaaca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583343 accaaacagacctaaaagaaacacaatcaaaaggatggagggagaataaagagcctacctgttcaaaca 7583275  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 7583638 - 7583579
Alignment:
Q  8 ttaagaaattgtttcgactagaaattacatttagtttataaatacgaataatatagaaaa 67  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7583638 ttaagaaattgtttcgactagaaattacatttagtttataaatatgaataatatagaaaa 7583579  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 267 - 364
Target Start/End: Original strand, 7097868 - 7097962
Alignment:
Q  267 ataaaatataaaccacaagctcaaatatgtgtcttaccaaacaga-cctaaaagaaacacaatcaaaaggatggagggagaataaagagcctacctgtt 364  Q
    ||||| ||||||||  ||||||||||||||||||||| ||| ||| ||||||| || |||||| ||||||||    |||||||||||||||||||||||    
T  7097868 ataaactataaaccgtaagctcaaatatgtgtcttactaaatagaccctaaaataatcacaatgaaaaggat----ggagaataaagagcctacctgtt 7097962  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 42747711 - 42747589
Alignment:
Q  114 taaaattgagataaaaagtgaaaagttataagctt--------aagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataa 205  Q
    ||||||||||||||||||||| ||| |||||||||        ||| |||||||| |  ||||| ||| ||||| |||||||||||||| ||| ||||||    
T  42747711 taaaattgagataaaaagtgataagctataagctttaagttataagttacttgaattagcttataaaaaaacactataagctcataaaattaagctataa 42747612  T
Q  206 actcgtgagaaaatgacagttac 228  Q
     || ||||| |||||||||||||    
T  42747611 gcttgtgagtaaatgacagttac 42747589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 21516785 - 21516825
Alignment:
Q  273 tataaaccacaagctcaaatatgtgtcttaccaaacagacc 313  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  21516785 tataagccataagctcaaatatgtgtcttaccaaacagacc 21516825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 3121465 - 3121424
Alignment:
Q  181 ataagctcataaaaataaactataaactcgtgagaaaatgac 222  Q
    ||||||| ||||||||||||||||||||| | ||||||||||    
T  3121465 ataagctaataaaaataaactataaactcataagaaaatgac 3121424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 31117863 - 31117899
Alignment:
Q  274 ataaaccacaagctcaaatatgtgtcttaccaaacag 310  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  31117863 ataagccataagctcaaatatgtgtcttaccaaacag 31117899  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 32882830 - 32882703
Alignment:
Q  102 agattgcagggataaaattgagataaaaagtgaaaagttataagctt-aagatacttgaacttacttatcaaataacacaataagctcataaaaataaac 200  Q
    ||||||||||| ||||||||||||||||||||| ||| | ||||||| ||| |||||||| |   |||||||| ||||  ||||||||| |||||||| |    
T  32882830 agattgcaggggtaaaattgagataaaaagtgagaagctgtaagctttaagctacttgaattagtttatcaaaaaacattataagctcaaaaaaataagc 32882731  T
Q  201 tataaactcgtgagaaaatgacagttac 228  Q
    ||||| ||||||||||||||||| ||||    
T  32882730 tataagctcgtgagaaaatgacaattac 32882703  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 367
Target Start/End: Original strand, 17981321 - 17981401
Alignment:
Q  289 aaatatgtgtcttaccaaacagac-ctaaaagaaacacaatcaaaa-ggatggagggagaataaagagcctacctgttcaa 367  Q
    |||||| |||||||||||||  || ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  17981321 aaatatttgtcttaccaaacgaactctaaaagaaacacaatcaaaaaggatggagggagaataaagagcttacccgttcaa 17981401  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 30202553 - 30202595
Alignment:
Q  318 agaaacacaatcaaaaggatggagggagaataaagagcctacc 360  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  30202553 agaaacataatcaaaaggatggcgggagaataaagagcctacc 30202595  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 28175551 - 28175675
Alignment:
Q  102 agattgcagggataaaattgagataaaaagtgaaaagttataagct-taagatacttgaacttacttatcaaataacacaataagctcataaaaataaac 200  Q
    |||||| |||| ||||||| ||||||||||| |||||| ||||||| |||| |||||||  |  ||||||||| ||  | |||||||||||||||||| |    
T  28175551 agattgtaggggtaaaattcagataaaaagtaaaaagtgataagctataagctacttgagttagcttatcaaagaaagctataagctcataaaaataagc 28175650  T
Q  201 tataaactcgtgagaaaatgacagt 225  Q
    ||||||||| | |||||||||||||    
T  28175651 tataaactcattagaaaatgacagt 28175675  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 18654737 - 18654783
Alignment:
Q  181 ataagctcataaaaataaactataaactcgtgagaaaatgacagtta 227  Q
    |||||||||||||||||| |||||||||| |||||||||||| ||||    
T  18654737 ataagctcataaaaataatctataaactcatgagaaaatgaccgtta 18654783  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 10097322 - 10097362
Alignment:
Q  181 ataagctcataaaaataaactataaactcgtgagaaaatga 221  Q
    ||||||| |||||||||||| |||||||| |||||||||||    
T  10097322 ataagcttataaaaataaacaataaactcatgagaaaatga 10097362  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 43822636 - 43822510
Alignment:
Q  103 gattgcagggataaaattgagataaaaagtgaaaagttataagc-ttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaact 201  Q
    |||||||||| |||||| |||||||||||||| ||| ||||||| ||||| |||||||| |  ||||||||| | ||| |||| ||||| ||||||| ||    
T  43822636 gattgcaggggtaaaatggagataaaaagtgacaagctataagctttaagctacttgaattagcttatcaaaaaccactataatctcatgaaaataagct 43822537  T
Q  202 ataaactcgtgagaaaatgacagttac 228  Q
    |||| || |||  ||||||||| ||||    
T  43822536 ataagcttgtgtaaaaatgacaattac 43822510  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 34778194 - 34778135
Alignment:
Q  245 agtcatatgaacttataagtta-ataaaatataaaccacaagctcaaatatgtgtcttac 303  Q
    |||||||||||||||||||||| ||||| ||||| ||| || ||||||||||||||||||    
T  34778194 agtcatatgaacttataagttatataaattataatccataaactcaaatatgtgtcttac 34778135  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 37334597 - 37334552
Alignment:
Q  102 agattgcagggataaaattgagataaaaagtgaaaagttataagct 147  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||    
T  37334597 agattgcacggataaaattgagataaaaagcgaaaagctataagct 37334552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 44560204 - 44560128
Alignment:
Q  190 taaaaataaactataaactcgtgagaaaatgacagttacgaaatttgnnnnnnnnagtcatatgaacttataagtta 266  Q
    |||||||||| |||||||||||||||||||||| ||||| |||  ||        ||||||||||||||||||||||    
T  44560204 taaaaataaattataaactcgtgagaaaatgacggttaccaaacatgtcttttttagtcatatgaacttataagtta 44560128  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 1384294 - 1384248
Alignment:
Q  102 agattgcagggataaaattgagataaaaagtgaaaagttataagctt 148  Q
    ||||||||| | ||||| ||||||||||||||| |||||||||||||    
T  1384294 agattgcagcggtaaaaatgagataaaaagtgataagttataagctt 1384248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 13799996 - 13800038
Alignment:
Q  102 agattgcagggataaaattgagataaaaagtgaaaagttataa 144  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||    
T  13799996 agattgcaggggtaaaattgagataaaaagtgataagctataa 13800038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 32582556 - 32582511
Alignment:
Q  102 agattgcagggataaaattgagataaaaagtgaaaagttataagct 147  Q
    |||||||| || ||||||||||||||||||||| ||| ||||||||    
T  32582556 agattgcaagggtaaaattgagataaaaagtgataagctataagct 32582511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 35682540 - 35682500
Alignment:
Q  182 taagctcataaaaataaactataaactcgtgagaaaatgac 222  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  35682540 taagctaataaaaataaactataagcttgtgagaaaatgac 35682500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 13615247 - 13615310
Alignment:
Q  165 cttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttac 228  Q
    |||||| || ||||||||||  ||||||||||||  ||||||||||||||||||||||||||||    
T  13615247 cttatcgaaaaacacaataatatcataaaaataaggtataaactcgtgagaaaatgacagttac 13615310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 21501694 - 21501594
Alignment:
Q  134 aaaagttataagct-taagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttacgaaa 232  Q
    |||| ||||||||| |||| |||||||| |  ||||||||| ||||| ||| |||  ||||||||| |||||| ||||||||||| |||||||||| |||    
T  21501694 aaaaattataagctataagctacttgaattagcttatcaaaaaacactatatgctagtaaaaataagctataagctcgtgagaaagtgacagttaccaaa 21501595  T
Q  233 t 233  Q
    |    
T  21501594 t 21501594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 25886023 - 25885955
Alignment:
Q  165 cttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttacgaaat 233  Q
    ||||||||| ||||| ||||||| ||||||| || |||||| |||||| ||||||||||||||| ||||    
T  25886023 cttatcaaaaaacacgataagctaataaaaacaagctataagctcgtgtgaaaatgacagttacaaaat 25885955  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 17425642 - 17425684
Alignment:
Q  106 tgcagggataaaattgagataaaaagtgaaaagttataagctt 148  Q
    ||||||| ||||||||||||||||||||| | |||||||||||    
T  17425642 tgcaggggtaaaattgagataaaaagtgataggttataagctt 17425684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 20435533 - 20435493
Alignment:
Q  104 attgcagggataaaattgagataaaaagtgaaaagttataa 144  Q
    |||| |||| ||||||||||||||||||||| |||||||||    
T  20435533 attgtaggggtaaaattgagataaaaagtgacaagttataa 20435493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 39276418 - 39276338
Alignment:
Q  147 ttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagtta 227  Q
    ||||| |||||||| |  ||||||||| |||   |||||||  |||||||||  ||||| |||||||||||||||||||||    
T  39276418 ttaagctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagtta 39276338  T

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Target: scaffold0040 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 49874 - 49994
Alignment:
Q  102 agattgcagggataaaattgagataaaaagtgaaaagttataagcttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaact 201  Q
    |||||||| || ||||||||||||||||||||| ||| |||||||      |||||||| |  ||||||| | | | | |||||||| ||||||||| ||    
T  49874 agattgcaagggtaaaattgagataaaaagtgataagctataagc------tacttgaattagcttatcacaaaccgctataagctcttaaaaataagct 49967  T
Q  202 ataaactcgtgagaaaatgacagttac 228  Q
    |||| ||||||||||| |||| |||||    
T  49968 ataagctcgtgagaaagtgaccgttac 49994  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 1288365 - 1288292
Alignment:
Q  148 taagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatga 221  Q
    ||||||||||||| | |||||||||| ||||  |||||||||| | ||||| |||| ||||||||  |||||||    
T  1288365 taagatacttgaattaacttatcaaaaaacattataagctcatgagaataagctatgaactcgtgtaaaaatga 1288292  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 36625959 - 36625991
Alignment:
Q  187 tcataaaaataaactataaactcgtgagaaaat 219  Q
    |||||||||||||||||| ||||||||||||||    
T  36625959 tcataaaaataaactatatactcgtgagaaaat 36625991  T

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