View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461-Insertion-14 (Length: 157)
Name: NF5461-Insertion-14
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461-Insertion-14 |
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| [»] scaffold1526 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold1526 (Bit Score: 101; Significance: 2e-50; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 443 - 288
Alignment:
| Q |
7 |
attaaggtatatgtactatgaagggcattgttagtatgcaagagccatgtcaatcaattcatttcaagttatggattgttttccttga-----nnnnnnn |
101 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
443 |
attaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcaagttatggattgttttccttgatttttttttctt |
344 |
T |
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| Q |
102 |
nncaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
343 |
ttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 3379069 - 3379224
Alignment:
| Q |
7 |
attaaggtatatgtactatgaagggcattgttagtatgcaagagccatgtcaatcaattcatttcaagttatggattgttttccttga-----nnnnnnn |
101 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3379069 |
attaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcaagttatggattgttttccttgatttttttttctt |
3379168 |
T |
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| Q |
102 |
nncaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
157 |
Q |
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| T |
3379169 |
ttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
3379224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 95; Significance: 8e-47; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 95; E-Value: 8e-47
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 4851 - 5007
Alignment:
| Q |
7 |
attaaggtatatgtactatgaagggcattgttagtatgcaagagccatgtcaatcaattcatttcaagttatggattgttttccttga------nnnnnn |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
4851 |
attaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcatgttatggattgttttccttgattttttttttct |
4950 |
T |
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| Q |
101 |
nnncaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
157 |
Q |
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| T |
4951 |
tttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
5007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 95; Significance: 8e-47; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 95; E-Value: 8e-47
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 24217 - 24061
Alignment:
| Q |
7 |
attaaggtatatgtactatgaagggcattgttagtatgcaagagccatgtcaatcaattcatttcaagttatggattgttttccttga------nnnnnn |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
24217 |
attaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcatgttatggattgttttccttgattttttttttct |
24118 |
T |
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| Q |
101 |
nnncaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24117 |
tttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
24061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 95; Significance: 8e-47; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 95; E-Value: 8e-47
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 53126 - 52972
Alignment:
| Q |
7 |
attaaggtatatgtactatgaagggcattgttagtatgcaagagccatgtcaatcaattcatttcaagttatggattgttttccttga----nnnnnnnn |
102 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53126 |
attaagttatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcaagttatggattgttttccttgattttttttttct |
53027 |
T |
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| Q |
103 |
ncaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
157 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53026 |
tcaaacatccaatgtgtattttaatggattatatgtaaatgtcatctttcgtctg |
52972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 14764 - 14920
Alignment:
| Q |
7 |
attaaggtatatgtactatgaagggcattgttagtatgcaagagccatgtcaatcaattcatttcaagttatggattgttttccttg------annnnnn |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
14764 |
attaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcatgttatggattgttttccttgtatttttttttct |
14863 |
T |
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| Q |
101 |
nnncaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14864 |
tttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
14920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 44496336 - 44496492
Alignment:
| Q |
7 |
attaaggtatatgtactatgaagggcattgttagtatgcaagagccatgtcaatcaattcatttcaagttatggattgttttccttga------nnnnnn |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
44496336 |
attaaggtatatgtactgtgaagggcattgttagtatgcaagagccatgtcaattaattcatttcaatttatggattgttttccttgaatttttttttct |
44496435 |
T |
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| Q |
101 |
nnncaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctg |
157 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44496436 |
tttcaaacatccaatgtgtatttcaatggattatatataaatgtcatctttcgtctg |
44496492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 28335452 - 28335400
Alignment:
| Q |
25 |
tgaagggcattgttagtatgcaagagccatgtcaatcaattcatttcaagttat |
78 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |
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| T |
28335452 |
tgaagggcattgttagtatgcgagagccatgccaat-aattcattttaagttat |
28335400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 44787407 - 44787355
Alignment:
| Q |
25 |
tgaagggcattgttagtatgcaagagccatgtcaatcaattcatttcaagttat |
78 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |
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| T |
44787407 |
tgaagggcattgttagtatgcgagagccatgccaat-aattcattttaagttat |
44787355 |
T |
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