View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461-Insertion-2 (Length: 906)
Name: NF5461-Insertion-2
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461-Insertion-2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 741; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 7 - 906
Target Start/End: Complemental strand, 36330732 - 36329830
Alignment:
| Q |
7 |
agggaagacatgtgaggatgatacaaggaattactggtatgcctactgagacttttcaaggtaatgcagagaataagaagttgatgatgagtgatgcttt |
106 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330732 |
agggaagacatgtgaggatgatagaaggaattactggtatgcctactgagacttttcaaggtaatgcagagaataagaagttgatgatgagtgatgcttt |
36330633 |
T |
|
| Q |
107 |
tgatcctagttgcgaggttgttgtgtgtggtgatggactcattaccatagaggatcttcttaatccaaattttgttgatcacaataaactaaagattagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330632 |
tgatcctagttgcgaggttgttgtgtgtggtgatggactcattaccatagaggatcttcttaatccaaattttgttgatcacaataaactaaagattagg |
36330533 |
T |
|
| Q |
207 |
gttcaatcaattgagaagaatgctagaactatgcatacaccacttccagaggctgatcaagccaaggtagaaaggaaggtagcatatgttatatcaaaaa |
306 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330532 |
gttcaatcaattgagaagaatggtagaactatgcatacaccacttccagaggctgatcaagccaaggtagaaaggaaggtagcatatgttatatcaaaaa |
36330433 |
T |
|
| Q |
307 |
agcatgtcacaaagtatcagccttttattcagacaaacagagatgcaacgactatatccttttatgaaaaagtagatatagggttttcaactataggagc |
406 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330432 |
agtatgtcacaaagtatcagccttttattcagacaaacagagatgcaacgactatatccttttatgaaaaagtagatatagggttttcaactataggagc |
36330333 |
T |
|
| Q |
407 |
tatagcttctgaatttagaccaagatctaaatttgagagagaagtagctgcactagtactggaacctcatagaaatgatggttctagacttaacaaggta |
506 |
Q |
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| T |
36330332 |
tatagcttctgaatttagaccaagatctaaatttgagagagaagtagctgcactagtactggaagctcatagagatgatggttctagacttaacaaggta |
36330233 |
T |
|
| Q |
507 |
atgatcttgtttacaattgagtttgacaacattgatttatgaagttaactcattagggtttaacatacttgggtgcttttaaattttacaagtcaaactt |
606 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330232 |
atgatgttgtttacaattgagtttgacaacattgatttgtgaagttaactcattagggtttaacatacttgggtgcttttaaattttacaagtcaaactt |
36330133 |
T |
|
| Q |
607 |
taatttgtttgttaagttgatgaccatgtattattagtaagaagatttgaatctaaaatgtta--nnnnnnnggcttttagtgatttcttcacaaatgac |
704 |
Q |
| |
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| T |
36330132 |
taatttgtatgttaagttgatgaccatgtattattagtaagaagatttgaatctaaaatgttatttttttttggcttttagtgatttcttcacaaatgac |
36330033 |
T |
|
| Q |
705 |
tggactgaaannnnnnnnnnnnnnnnaatatttcgtttgcttctccctctatttctcagcgttcttaactcttttacccttttatcaaattatgttcaaa |
804 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
36330032 |
tggactg-aattttattttattttttaatatttcgtttgcttctccctctatttctcagcgttcttaagtcttttacccttttatcaaattatgttgaaa |
36329934 |
T |
|
| Q |
805 |
attttagcagcatggatgaataaaatatggac-ttaatttcacacacattc-attactactgcc-aaagtgatgtatatattcttggatacattatgaga |
901 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
36329933 |
attttagcagcatggatgaataaaatgtggactttaatttcacacacattcaattactactgccaaaagtgatgtatatattctt-gatacattatgaga |
36329835 |
T |
|
| Q |
902 |
tgacg |
906 |
Q |
| |
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||||| |
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| T |
36329834 |
tgacg |
36329830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 229 - 463
Target Start/End: Complemental strand, 44369613 - 44369379
Alignment:
| Q |
229 |
ctagaactatgcatacaccacttccagaggctgatcaagccaaggtagaaaggaaggtagcatatgttatatcaaaaaagcatgtcacaaagtatcagcc |
328 |
Q |
| |
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|||||||| | ||| ||||||||||| |||| |||||||| ||||| ||||||||||| || ||| ||||| || | || |||||||||| || || |
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| T |
44369613 |
ctagaactgttcatgcaccacttccaaaggcagatcaagcgaaggtggaaaggaaggtggcgtatcaaatatctaaggaacaagtcacaaagtggcaacc |
44369514 |
T |
|
| Q |
329 |
ttttattcagacaaacagagatgcaacgactatatccttttatgaaaaagtagatatagggttttcaactataggagctatagcttctgaatttagacca |
428 |
Q |
| |
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||||||||| ||| || || || | |||| | |||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
44369513 |
ccttattcagaaaaatagggaggctcctactaagtactttgatgaaaagacagatctagggttttcaactataggagcaatagcttctgaatttgaaccc |
44369414 |
T |
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| Q |
429 |
agatctaaatttgagagagaagtagctgcactagt |
463 |
Q |
| |
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||| || |||||||||| || | ||||||||||| |
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| T |
44369413 |
agaactgaatttgagaggaaaatggctgcactagt |
44369379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 215 - 423
Target Start/End: Complemental strand, 52929692 - 52929484
Alignment:
| Q |
215 |
aattgagaagaatgctagaactatgcatacaccacttccagaggctgatcaagccaaggtagaaaggaaggtagcatatgttatatcaaaaaagcatgtc |
314 |
Q |
| |
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||||||||| | | |||||||| | ||| ||||||||||| |||| |||||||| ||||||||||||||||| || |||| |||||||| || || ||| |
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| T |
52929692 |
aattgagaatagttctagaactgttcatgcaccacttccaaaggcagatcaagcaaaggtagaaaggaaggtggcgtatgaaatatcaaagaaacaagtc |
52929593 |
T |
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| Q |
315 |
acaaagtatcagccttttattcagacaaacagagatgcaacgactatatccttttatgaaaaagtagatatagggttttcaactataggagctatagctt |
414 |
Q |
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|||| || || | ||||||||| ||| || || || ||| | | |||| ||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
52929592 |
acaaggtggcaatccattattcagagaaatagggaggctcttactgtgtactttgatgaaaagatagatctagggttttcaactataggagctatagctt |
52929493 |
T |
|
| Q |
415 |
ctgaattta |
423 |
Q |
| |
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||||||||| |
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| T |
52929492 |
ctgaattta |
52929484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 229 - 463
Target Start/End: Original strand, 20237864 - 20238098
Alignment:
| Q |
229 |
ctagaactatgcatacaccacttccagaggctgatcaagccaaggtagaaaggaaggtagcatatgttatatcaaaaaagcatgtcacaaagtatcagcc |
328 |
Q |
| |
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|||||||| | ||| ||||||||||| |||| |||||||| ||||| ||||||||||| || ||| ||||| || | || |||||||||| || || |
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| T |
20237864 |
ctagaactgttcatgcaccacttccaaaggcagatcaagcgaaggtggaaaggaaggtggcgtatcaaatatctaaggaacaagtcacaaagtggcaacc |
20237963 |
T |
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| Q |
329 |
ttttattcagacaaacagagatgcaacgactatatccttttatgaaaaagtagatatagggttttcaactataggagctatagcttctgaatttagacca |
428 |
Q |
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||||||||| ||| || || || | |||| | |||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
20237964 |
ccttattcagaaaaatagggaggctcctactaagtactttgatgaaaagacagatctagggttttcaactataggagcaatagcttctgaatttgaaccc |
20238063 |
T |
|
| Q |
429 |
agatctaaatttgagagagaagtagctgcactagt |
463 |
Q |
| |
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||| || |||||||||| || | ||||||||||| |
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| T |
20238064 |
agaactgaatttgagaggaaaatggctgcactagt |
20238098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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