View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5461-Insertion-4 (Length: 642)

Name: NF5461-Insertion-4
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5461-Insertion-4
NF5461-Insertion-4
[»] chr2 (8 HSPs)
chr2 (242-642)||(39690820-39691220)
chr2 (7-227)||(39690576-39690796)
chr2 (42-214)||(39931573-39931743)
chr2 (42-176)||(39699727-39699859)
chr2 (446-636)||(39700213-39700403)
chr2 (449-628)||(39931011-39931190)
chr2 (42-188)||(39936980-39937111)
chr2 (505-579)||(39935317-39935391)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 242 - 642
Target Start/End: Original strand, 39690820 - 39691220
Alignment:
Q  242 gtgtcttaaccatataataatcgagagtttggctaaaaagcaagtaaaatttagtcgatgattgtttccgtcagaatatgaattcagatcgatctcctga 341  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39690820 gtgtcttaaccatataataatggagagtttggctaaaaagcaagtaaaatttagtcgatgattgtttccgtcagaatatgaattcagatcgatctcctga 39690919  T
Q  342 actatttgttgctcaatgagctcattcttgagctcaatcacttgatatcaaaagcatgtcaatattatttaaatggttatannnnnnnnnnnnnnnngtt 441  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||                |||    
T  39690920 actatttgtcgctcaatgagctcattcttgagctgaatcacttgatataaaaagcatgtcaatattatttaaatggttatattttttattttattttgtt 39691019  T
Q  442 gattaattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcat 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39691020 gattaattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcat 39691119  T
Q  542 caatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagtt 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39691120 caatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagtt 39691219  T
Q  642 g 642  Q
    |    
T  39691220 g 39691220  T

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Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 39690576 - 39690796
Alignment:
Q  7 aaggaacacacccggtttgtaaaagagcacacaaagtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39690576 aaggaacacacccggtttgtaaaagagcacacaaagtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagta 39690675  T
Q  107 ttgggagcaaacgtggtggttggataagtttcactttcttcattggtctctctctttttcctttcatcttcttactcatcaaacattattaattcactca 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39690676 ttgggagcaaacgtggtggttggataagtttccctttcttcattggtctctctctttttcctttcatgttcttactcatcaaacattattaattcactca 39690775  T
Q  207 cttttacacatctaaagagta 227  Q
    || ||||||||||||||||||    
T  39690776 ctcttacacatctaaagagta 39690796  T

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Target: chr2; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 39931743 - 39931573
Alignment:
Q  42 gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagtattgggagcaaacgtggtggttggataagtttcact 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||| | ||    
T  39931743 gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttaagtaatgggagcaagcgtggcggttggataagttcccct 39931644  T
Q  142 ttcttcattggtctctctctttttcctttcatcttcttactcatcaaacattattaattcactcacttttaca 214  Q
    ||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  39931643 ttcttcattggtct--ctctttttcctttcatcttttaactcatcaaacattattaattcactcacttttaca 39931573  T

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Target: chr2; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 39699727 - 39699859
Alignment:
Q  42 gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagtattgggagcaaacgtggtggttggataagtttcact 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||    
T  39699727 gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagtttgagtattgggagcaagcgtggtggttggataagtttccct 39699826  T
Q  142 ttcttcattggtctctctctttttcctttcatctt 176  Q
    |||||||||||  | |||||| |||||||||||||    
T  39699827 ttcttcattgg--tatctcttcttcctttcatctt 39699859  T

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Target: chr2; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 446 - 636
Target Start/End: Original strand, 39700213 - 39700403
Alignment:
Q  446 aattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaat 545  Q
    ||||||||||||| || ||||||||||||| |||||  | |||||||  || || |||||||||||||||||||  ||||||||||| ||||||||||||    
T  39700213 aattataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaagagcatcaat 39700312  T
Q  546 gcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattct 636  Q
    |||||||| |||||||||||||||||||||||| | | |||||| ||| |  |||| |||||||||||||| |||||||||||||| ||||    
T  39700313 gcagctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttct 39700403  T

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Target: chr2; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 449 - 628
Target Start/End: Complemental strand, 39931190 - 39931011
Alignment:
Q  449 tataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaatgca 548  Q
    ||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||    
T  39931190 tataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaagagcatcactgca 39931091  T
Q  549 gctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttgg 628  Q
     |||| |||  ||| ||||| ||||||||||| ||| |||||||| | || || |||||| ||||||| |||||||||||    
T  39931090 actcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttgg 39931011  T

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Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 39937111 - 39936980
Alignment:
Q  42 gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagtattgggagcaaacgtggtggttggataagtttcact 141  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||               || ||||| ||||||||||||||| |     
T  39937111 gtgaagtgcaacaatggatggtaagctagcagcatcctcaaaagaagcacatgagagc---------------aagcgtggcggttggataagtttcccc 39937027  T
Q  142 ttcttcattggtctctctctttttcctttcatcttcttactcatcaa 188  Q
    |||||||||||| ||||||||||| |||||||||| | |||||||||    
T  39937026 ttcttcattggtttctctctttttactttcatcttttaactcatcaa 39936980  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 505 - 579
Target Start/End: Complemental strand, 39935391 - 39935317
Alignment:
Q  505 ttgtatatcttataagtgaattcaatatcaagagcatcaatgcagctcagattgtaaacgttgttgttggaagca 579  Q
    ||||||||||||||   ||||||||||| |||||||||| ||| ||||||||||||||| ||||| | |||||||    
T  39935391 ttgtatatcttatacaagaattcaatataaagagcatcattgctgctcagattgtaaacattgttatcggaagca 39935317  T

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