View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5461-Insertion-5 (Length: 615)

Name: NF5461-Insertion-5
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5461-Insertion-5
NF5461-Insertion-5
[»] chr6 (8 HSPs)
chr6 (207-615)||(25326341-25326740)
chr6 (207-615)||(26158876-26159275)
chr6 (147-510)||(26171538-26171897)
chr6 (207-412)||(26156035-26156239)
chr6 (29-142)||(25326225-25326338)
chr6 (29-142)||(26155919-26156032)
chr6 (29-142)||(26158760-26158873)
chr6 (534-615)||(26171149-26171238)
[»] chr8 (1 HSPs)
chr8 (462-552)||(20484596-20484688)
[»] chr4 (2 HSPs)
chr4 (468-552)||(17385491-17385577)
chr4 (297-413)||(17385205-17385320)
[»] chr7 (2 HSPs)
chr7 (503-552)||(5884707-5884756)
chr7 (288-413)||(5884964-5885088)
[»] chr5 (2 HSPs)
chr5 (288-413)||(27708859-27708983)
chr5 (462-552)||(27709148-27709240)
[»] chr1 (1 HSPs)
chr1 (462-552)||(51511858-51511950)
[»] chr3 (1 HSPs)
chr3 (138-193)||(46181244-46181299)


Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 207 - 615
Target Start/End: Original strand, 25326341 - 25326740
Alignment:
Q  207 gttcatgctagttttcaaattccagaactcatgctagttgtattagcttatataccatattctagattgaannnnnnnnnngaagacgaagcattagaac 306  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||| ||||||||||||    
T  25326341 gttcacgctagttttcaaattccagaactcatgctagttgtattagcttatataccatattctagattgaaaaaatgttt-gaagacaaagcattagaac 25326439  T
Q  307 cactactttcatgagaaacacgacataaaaacctcataatgctcaatcaatcttacaacaagagttgccaatttgttcttcataacttttgacttatttt 406  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  25326440 cactactttcatgagaaacacgacacaaaaacctcataatgctcaaacaatcttacaacaagagttgccatattgttcttcataacttttgacttatttt 25326539  T
Q  407 caccatatcgtttgacttatctgcacgactttcccaatacttgttgaacttcacttccatatattcaatgttgtatgaatttttatccactgcttgaaaa 506  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25326540 caccatatcgtttgacttatctgcacgactttctcaatacttgttgaacttcacttccatatattcaatgttttatgaatttttatccactgcttgaaaa 25326639  T
Q  507 gagttagcaataacatgcaatgacccataaaaagaaagaattgcataagtcttcaaaaacatcatggtcagaatcccaatcagtctgattaggacatcat 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||     |||||||||||||||    
T  25326640 gagttagcaataacatgcaatgacccataaaaagaaagaattgcataagtcttcaaaaa---catggtcagaatcccaat-----tgattaggacatcat 25326731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 207 - 615
Target Start/End: Original strand, 26158876 - 26159275
Alignment:
Q  207 gttcatgctagttttcaaattccagaactcatgctagttgtattagcttatataccatattctagattgaannnnnnnnnngaagacgaagcattagaac 306  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||| ||||||||||||    
T  26158876 gttcacgctagttttcaaattccagaactcatgctagttgtattagcttatataccatattctagattgaaaaaatgttt-gaagacaaagcattagaac 26158974  T
Q  307 cactactttcatgagaaacacgacataaaaacctcataatgctcaatcaatcttacaacaagagttgccaatttgttcttcataacttttgacttatttt 406  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  26158975 cactactttcatgagaaacacgacacaaaaacctcataatgctcaaacaatcttacaacaagagttgccatattgttcttcataacttttgacttatttt 26159074  T
Q  407 caccatatcgtttgacttatctgcacgactttcccaatacttgttgaacttcacttccatatattcaatgttgtatgaatttttatccactgcttgaaaa 506  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26159075 caccatatcgtttgacttatctgcacgactttctcaatacttgttgaacttcacttccatatattcaatgttttatgaatttttatccactgcttgaaaa 26159174  T
Q  507 gagttagcaataacatgcaatgacccataaaaagaaagaattgcataagtcttcaaaaacatcatggtcagaatcccaatcagtctgattaggacatcat 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||     |||||||||||||||    
T  26159175 gagttagcaataacatgcaatgacccataaaaagaaagaattgcataagtcttcaaaaa---catggtcagaatcccaat-----tgattaggacatcat 26159266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 147 - 510
Target Start/End: Complemental strand, 26171897 - 26171538
Alignment:
Q  147 tcttatcccaacaaaatttgctcactccaaacaaaacttttgaaaatgcccctagcgcaagttcatgctagttttcaaattccagaactcatgctagttg 246  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||  ||||||||| |||||||||||||||||||||||||||| ||||     
T  26171897 tcttatcccaacaaaatttgctcactcctaaccaaactttcgaaaatgcccctaaagcaagttcacgctagttttcaaattccagaactcatgccagttt 26171798  T
Q  247 tattagcttatataccatattctagattgaannnnnnnnnngaagacgaagcattagaaccactactttcatgagaaacacgacataaaaacctcataat 346  Q
    |||||||||||||||||||||||||||||||          |||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  26171797 tattagcttatataccatattctagattgaaaaaatgttt-gaagacaaagcattagaaccactattttaatgagaaacacgacacaaaaacctcataat 26171699  T
Q  347 gctcaatcaatcttacaacaagagttgccaatttgttcttcataacttttgacttattttcaccatatcgtttgacttatctgcacgactttcccaatac 446  Q
    ||||||||||||||||||   ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26171698 gctcaatcaatcttacaa---gagttgccaatttgttcgtcataacttttgatttattttcaccatatcgtttgacttatctgcacgactttcccaatac 26171602  T
Q  447 ttgttgaacttcacttccatatattcaatgttgtatgaatttttatccactgcttgaaaagagt 510  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26171601 ttgttgaacttcacttccatatattcaatgttttatgaatttttatccactgcttgaaaagagt 26171538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 207 - 412
Target Start/End: Original strand, 26156035 - 26156239
Alignment:
Q  207 gttcatgctagttttcaaattccagaactcatgctagttgtattagcttatataccatattctagattgaannnnnnnnnngaagacgaagcattagaac 306  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||| ||||||||||||    
T  26156035 gttcacgctagttttcaaattccagaactcatgctagttgtattagcttatataccatattctagattgaaaaaatgttt-gaagacaaagcattagaac 26156133  T
Q  307 cactactttcatgagaaacacgacataaaaacctcataatgctcaatcaatcttacaacaagagttgccaatttgttcttcataacttttgacttatttt 406  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  26156134 cactactttcatgagaaacacgacacaaaaacctcataatgctcaaacaatcttacaacaagagttgccatattgttcttcataacttttgacttatttt 26156233  T
Q  407 caccat 412  Q
    ||||||    
T  26156234 caccat 26156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 25326225 - 25326338
Alignment:
Q  29 gcgcataaactctcaaatagtttcaaaaaagtttatagtccaccacaccaagccttgaaattttttgagggccaaaattattgtatgtgtgaccacgtaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  25326225 gcgcataaactctcaaatagtttcaaaaaagtttatagtccaccacaccaagccttgaaattttttgagggccaaaattattgtacgtgtgaccgcgtaa 25326324  T
Q  129 atattgttggaaat 142  Q
    ||||||||||||||    
T  25326325 atattgttggaaat 25326338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 26155919 - 26156032
Alignment:
Q  29 gcgcataaactctcaaatagtttcaaaaaagtttatagtccaccacaccaagccttgaaattttttgagggccaaaattattgtatgtgtgaccacgtaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  26155919 gcgcataaactctcaaatagtttcaaaaaagtttatagtccaccacaccaagccttgaaattttttgagggccaaaattattgtacgtgtgaccgcgtaa 26156018  T
Q  129 atattgttggaaat 142  Q
    ||||||||||||||    
T  26156019 atattgttggaaat 26156032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 26158760 - 26158873
Alignment:
Q  29 gcgcataaactctcaaatagtttcaaaaaagtttatagtccaccacaccaagccttgaaattttttgagggccaaaattattgtatgtgtgaccacgtaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  26158760 gcgcataaactctcaaatagtttcaaaaaagtttatagtccaccacaccaagccttgaaattttttgagggccaaaattattgtacgtgtgaccgcgtaa 26158859  T
Q  129 atattgttggaaat 142  Q
    ||||||||||||||    
T  26158860 atattgttggaaat 26158873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 534 - 615
Target Start/End: Complemental strand, 26171238 - 26171149
Alignment:
Q  534 taaaaagaaagaattgcataagtcttcaaaaacatca--------tggtcagaatcccaatcagtctgattaggacatcatcctaactca 615  Q
    |||||||||||||||||||||||||||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||    
T  26171238 taaaaagaaagaattgcataagtcttcaaaaacatcacaaaaacatggtcagaatcccaatcggtctgattaggacatcatcctaactca 26171149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 462 - 552
Target Start/End: Complemental strand, 20484688 - 20484596
Alignment:
Q  462 tccatatattcaatgttgtatgaatttttatccactgcttgaaaa--gagttagcaataacatgcaatgacccataaaaagaaagaattgcat 552  Q
    ||||| ||||||||||| | |||||||  ||| | ||||||||||  ||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  20484688 tccatttattcaatgttttctgaatttccatcaattgcttgaaaaaagagttagcagtaacatgcaatgacccagaaaaagaaagagttgcat 20484596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 552
Target Start/End: Original strand, 17385491 - 17385577
Alignment:
Q  468 tattcaatgttgtatgaatttttatccactgcttgaaaa--gagttagcaataacatgcaatgacccataaaaagaaagaattgcat 552  Q
    ||||||||||| | |||||||  ||| | ||||||||||  ||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  17385491 tattcaatgttttctgaatttccatcaattgcttgaaaaaagagttagcactaacatgcaatgacccagaaaaagaaagagttgcat 17385577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 413
Target Start/End: Original strand, 17385205 - 17385320
Alignment:
Q  297 gcattagaaccactactttcatgagaaacacgacataaaaacctcataatgctcaatcaatcttacaacaagagttgccaatttgttcttcataactttt 396  Q
    ||||||||||||| ||||||| |||||||| || | |||  ||||||||||||||| ||||||  |||||||| |||  || || |||  |||||||||     
T  17385205 gcattagaaccaccactttcaggagaaacaggatacaaag-cctcataatgctcaaacaatctatcaacaagatttgttaacttcttcaccataactttg 17385303  T
Q  397 gacttattttcaccata 413  Q
    ||||| | |||||||||    
T  17385304 gacttctcttcaccata 17385320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 5884756 - 5884707
Alignment:
Q  503 aaaagagttagcaataacatgcaatgacccataaaaagaaagaattgcat 552  Q
    ||||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  5884756 aaaagagttagcagtaacatgcaatgacccagaaaaagaaagagttgcat 5884707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 413
Target Start/End: Complemental strand, 5885088 - 5884964
Alignment:
Q  288 gaagacgaagcattagaaccactactttcatgagaaacacgacataaaaacctcataatgctcaatcaatcttacaacaagagttgccaatttgttcttc 387  Q
    ||||| ||||||||||||| || ||||||| |||||||| || |  ||||||||||||||||||| ||||||  |||| ||| |||  || || |||  |    
T  5885088 gaagatgaagcattagaactaccactttcaagagaaacaggata-caaaacctcataatgctcaaacaatctatcaacgagatttgttaacttcttcacc 5884990  T
Q  388 ataacttttgacttattttcaccata 413  Q
    |||||||| ||||||| |||||||||    
T  5884989 ataactttggacttatcttcaccata 5884964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 413
Target Start/End: Original strand, 27708859 - 27708983
Alignment:
Q  288 gaagacgaagcattagaaccactactttcatgagaaacacgacataaaaacctcataatgctcaatcaatcttacaacaagagttgccaatttgttcttc 387  Q
    ||||| || ||||||||||||| ||||||| |||||||| || | |||  ||||||||||||||| ||||||  |||||||| |||  || || |||  |    
T  27708859 gaagatgaggcattagaaccaccactttcaggagaaacaggatacaaag-cctcataatgctcaaacaatctatcaacaagatttgttaacttcttcacc 27708957  T
Q  388 ataacttttgacttattttcaccata 413  Q
    |||||||| ||||||| |||||||||    
T  27708958 ataactttggacttatcttcaccata 27708983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 552
Target Start/End: Original strand, 27709148 - 27709240
Alignment:
Q  462 tccatatattcaatgttgtatgaatttttatccactgcttgaaaa--gagttagcaataacatgcaatgacccataaaaagaaagaattgcat 552  Q
    ||||| ||||||||||| | |||||||  ||| | ||||||||||  ||||||||| ||||||||||||||||| |||||| |||| ||||||    
T  27709148 tccatttattcaatgttttctgaatttccatcaattgcttgaaaaaagagttagcagtaacatgcaatgacccagaaaaaggaagagttgcat 27709240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 552
Target Start/End: Original strand, 51511858 - 51511950
Alignment:
Q  462 tccatatattcaatgttgtatgaatttttatccactgcttgaaaa--gagttagcaataacatgcaatgacccataaaaagaaagaattgcat 552  Q
    ||||| ||||||||||| |||||||||  ||| | ||||||||||  ||||||||| |||||  |||||||||| |||||||| || ||||||    
T  51511858 tccatttattcaatgttttatgaatttccatcaattgcttgaaaaaagagttagcagtaacaatcaatgacccagaaaaagaaggagttgcat 51511950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 46181244 - 46181299
Alignment:
Q  138 gaaatttgctcttatcccaacaaaatttgctcactccaaacaaaacttttgaaaat 193  Q
    |||| |||||||| ||||| ||||||||||||||||  ||||||||||| ||||||    
T  46181244 gaaaattgctcttctcccatcaaaatttgctcactctcaacaaaactttcgaaaat 46181299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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