View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461-Insertion-7 (Length: 556)
Name: NF5461-Insertion-7
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Complemental strand, 43867928 - 43867379
Alignment:
| Q |
8 |
gaaccaaattgtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtctt |
107 |
Q |
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| T |
43867928 |
gaaccaaattgtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtctt |
43867829 |
T |
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| Q |
108 |
ggctcccaaggcacctgcatctgcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtcnnnnnnnnnnnntgattcaat |
207 |
Q |
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| T |
43867828 |
ggctcccaaggcacctgcatctgcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtcaaaaaaa-----tgattcaat |
43867734 |
T |
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| Q |
208 |
taatggtttgtgtttgttgaaactagacaatgtgatgaaggagacacactagtgtcagtaggtacnnnnnnnnctt------ctctctgcccatgcactt |
301 |
Q |
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| T |
43867733 |
taatggtttgtgtttgttgaaactagacaatgtgatgaaggagacacactagtgtcagtaggtactttttttttttttttttctctctgcccatgcactt |
43867634 |
T |
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| Q |
302 |
ttggtaatttgctacaggaatattaatggaggttaatgggacccaccaattggtatgatcttagtgttgattggctagagagttgaagttaatcttattc |
401 |
Q |
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| T |
43867633 |
ttggtaatttgctacaggaatattaatggaggttaatgggacccaccaattggtatgatcttagtgttgattggctagagagttgaagttaatcttattc |
43867534 |
T |
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| Q |
402 |
tctgaattctaattggttgtctttttaattataggatttcttatggacccattagggtttgtgcattaaatttttgagtaagacatatttgttgtgttac |
501 |
Q |
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| T |
43867533 |
tctgaattctaattggttgtctttttaattataggatttcttatggacccattagggtttgtgcattaaatttttgagtaagacatatttgttgtgttac |
43867434 |
T |
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| Q |
502 |
atgtataataattcaataatgtctgctatttgaggtcccctctccttaggttgct |
556 |
Q |
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| T |
43867433 |
atgtataataattcaataatgtctgctatttgaggtcccctctccttaggttgct |
43867379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 50056084 - 50056137
Alignment:
| Q |
18 |
gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctct |
71 |
Q |
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| T |
50056084 |
gtcacaagcttgacagagaaaagcatcatcagcagcacaataccaacgtgctct |
50056137 |
T |
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