View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_high_1 (Length: 713)
Name: NF5461_high_1
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 16 - 705
Target Start/End: Complemental strand, 27878867 - 27878178
Alignment:
| Q |
16 |
catgttcttgtcactgtcccaaacgtgattctccacctcatagagaaagactcaagcgtccacctagcttccggagacttaactatagtaagccttaaag |
115 |
Q |
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| T |
27878867 |
catgttcttgtcactgtcccaaacgtgattctccacctcatagagaaagactcaagcgtccacctagcttccggagacttaactatagtaagccttaaag |
27878768 |
T |
|
| Q |
116 |
aagaagaaaaagtggtagcagttcttgcacgcataggtgatcaaatccaatggccattagccaaagatgtttcgacagtaaaactcgatgagtcgcatta |
215 |
Q |
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| T |
27878767 |
aagaagaaaaagtggtagcagttcttgcacgcataggtgatcaaatccaatggccattagccaaagatgtttcaacagtaaaactcgatgagtcgcatta |
27878668 |
T |
|
| Q |
216 |
tttcttcactcttaagcttccacagagtgatgatgaagttttgaactatggattgacagtggcggcaaaagggtcaaagaaagttttgaagaaacttgat |
315 |
Q |
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| T |
27878667 |
tttcttcactcttaagcttccacagagtgatgatgaagttttgaactatggattgacagtggcggcaaaagggtcaaagaaagttttgaagaaacttgat |
27878568 |
T |
|
| Q |
316 |
gaggttcttgaaaagtatagtcttctttctgttgagaaggtgaagggtgttaaagggtgggaggttttggagaaaaaggaagatgtagaggaaaattctg |
415 |
Q |
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| T |
27878567 |
gaggttcttgaaaagtacagtcttctttctgttgagaaggtgaagggtgttaaagggtgggaggttttggagaaaaaggaagatgtagaggaaaattctg |
27878468 |
T |
|
| Q |
416 |
ctgctgcttattggacaacgttggcaccaaacgtggaggattatagtggaagatttggtagatggattgctgcaggttcaggacaaatgatcagaggaat |
515 |
Q |
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| T |
27878467 |
ctgctgcttattggacaacgttggcaccaaacgtggaggattatagtggaagatttggtagatggattgctgcaggttcaggacaaatgatcagaggaat |
27878368 |
T |
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| Q |
516 |
tttgtggtgtggtgatgttactgttgatagattgaaatggggtgatgatttcatgaagaagaggttgcaacctggttcttctcaatcacagattagtcca |
615 |
Q |
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| T |
27878367 |
tttgtggtgcggtgatgttactgttgatagattgaaatggggtgatgatttcatgaagaagaggttgcaacctggttcttctcaatcacagattagtcca |
27878268 |
T |
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| Q |
616 |
cttgccctgaatagtatgaaaaggtaagaaatttgaaaaatttctatcgctgaatgttttgtttcgtgttttatgcaattttgatgatgt |
705 |
Q |
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| T |
27878267 |
cttgccctgaatagtatgaaaaggtaagaaatttgaaaaaaatctatcactgaatgttttgtttcgtgttttatgcaattttgatgatgt |
27878178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 514 - 577
Target Start/End: Complemental strand, 31870249 - 31870186
Alignment:
| Q |
514 |
attttgtggtgtggtgatgttactgttgatagattgaaatggggtgatgatttcatgaagaaga |
577 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||| |||| | |||||||||| |
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| T |
31870249 |
attttgtggtgtggggatgttactgttgataggttgaaatggggtaatgagattatgaagaaga |
31870186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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