View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_high_19 (Length: 348)
Name: NF5461_high_19
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 33268742 - 33268572
Alignment:
| Q |
37 |
cccagaaggaactattaggaaatatataaaattttaggattccatctaactaaacaagacaattaacttgaaaaatcaactaaattaagctttcttatat |
136 |
Q |
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| T |
33268742 |
cccagaaggaactattaggaaatatataaaattttaggattgcatctaactaaacaagacaattaacttgaaaaatcaactaaattaagctttcttatat |
33268643 |
T |
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| Q |
137 |
tcaaagtcaacaaattgagctttcttacagcagaagac--nnnnnnntgtcaaaccaatttcatattaagt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33268642 |
tcaaagtcaacaaattgagctttcttacagcagaagacaataaaaaatgtcaaaccaatttcatattaagt |
33268572 |
T |
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Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 33268504 - 33268448
Alignment:
| Q |
273 |
gtgtacctaggcatcaatccatcaggttgaattccatgctcaagacaataaagctcc |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268504 |
gtgtacctaggcatcaatccatcaggttgaattccatgctcaagacaataaagctcc |
33268448 |
T |
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