View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5461_high_33 (Length: 246)
Name: NF5461_high_33
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 324562 - 324775
Alignment:
| Q |
15 |
aaaaaatacaccagctaaataactcaattatcgtcattttttcaggaacattacatgccgacatttggcctcccgttcttcatcggtaactcaactcaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
324562 |
aaaaaatacaccagctaaataactcaattatcgtcattttttcaggaacattacatgcctacatttggcctcccgttcttcatcggt-----aactcaaa |
324656 |
T |
|
| Q |
115 |
tccatctttttcattttataaaccagctgtannnnnnnnnnnnnnnnnatgctgtccttgtttaagattatgaaacttaaaacgaaactgagttttctca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
324657 |
tccatctttttcattttataaaccagctgtattttttattttatttttatgctgtccttgtttaagattatgaaacttaaaacgaaactgagttttctca |
324756 |
T |
|
| Q |
215 |
atccattatccaccaccat |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
324757 |
atccattatccaccaccat |
324775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University