View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_high_35 (Length: 240)
Name: NF5461_high_35
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45593849 - 45594070
Alignment:
| Q |
1 |
ttcctgaatctgaaccagatatatcatcttcaatcttcagtttgtagctactggcattttgttcctgaatcaggttgacatcttcaagctttggtgttga |
100 |
Q |
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| T |
45593849 |
ttcctgaatctgaaccagatatatcatcttcaagcttcagtttgtagctactggcattttgttcctgaatcaggttgacatcttcaagctttggtgttga |
45593948 |
T |
|
| Q |
101 |
cactttcaggctttgtgttccgttgtttttcacctgcaatgagacatctgaacatgattcctccaatgagacgatgctttgacacactactcctgcacga |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45593949 |
cactttcaggctttgtgttcggttgtttttcacctgcaatgagacatctgaacatgattcctccaatgagacgatgctttgacacactactcctgcacgg |
45594048 |
T |
|
| Q |
201 |
aatttctctccaacatcagaat |
222 |
Q |
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||||| |||||||||||||||| |
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| T |
45594049 |
aatttgtctccaacatcagaat |
45594070 |
T |
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