View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_high_4 (Length: 546)
Name: NF5461_high_4
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Complemental strand, 9797280 - 9796756
Alignment:
| Q |
11 |
ttatacttaaggggaaataaatatat----tttaagggcttatatagttaggggccgagggagtattaatagagaaatatttatgtagtgattggtattg |
106 |
Q |
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| T |
9797280 |
ttatacttaaggggaaataaatatatatattttaagggcttata--gttaggggccgagggagtattaatagagaaatatttatgtagtgattggtatta |
9797183 |
T |
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| Q |
107 |
atatatagaatctagatcatagattccaagaagatgatgatg---taggagtagcagcaccacaagggcaaatggtcaactagtagtaacaacagaaaca |
203 |
Q |
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| T |
9797182 |
atatatagaatatagatcatagattccaacaagatgatgatgatgtaggagtagcagcaccacaagggcaaatggtcaactagtagtaacaacagaaaca |
9797083 |
T |
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| Q |
204 |
aatggaagcacaagaagccacatgtctttcccttaatctctctttcaagccctccaatgaccaccgaaaattttgcaatggccaatcacttcacatatat |
303 |
Q |
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| T |
9797082 |
aatggaagcacaagaagccacatgtctttcccttaatctctctttcaagccctccaatgaccaccgaaaattttgcaatggccaatcacttcacatatat |
9796983 |
T |
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| Q |
304 |
tttaccacttcttaacgctctcccctttttctctcctcctcttagctttttgattcattattcttcactactttgccatcatcatgtgttttcatcaata |
403 |
Q |
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| T |
9796982 |
tttaccacttcttaacgctctcccctttttctctcctcctcttagctttttgattcattattcttcactactttgccatcatcatgtgttttcatcaata |
9796883 |
T |
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| Q |
404 |
tctcctaacccaaacaactacctacacatttttcaatatttgtcacatgcaaaaaacatcttctgatatataactacattaaataaatatatgacatgat |
503 |
Q |
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| T |
9796882 |
tctcctaacccaaacaactacctacacatttttcaatatttgtcacatgcaaaaaacatcttctgatatataactacattaaataaatatatgacatgat |
9796783 |
T |
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| Q |
504 |
gtcactcacgttcttggatcacgtgca |
530 |
Q |
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| T |
9796782 |
gtcactcacgttcttggatcacgtgca |
9796756 |
T |
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