View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_high_40 (Length: 235)
Name: NF5461_high_40
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_high_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 9366839 - 9367050
Alignment:
| Q |
24 |
ccctccaaggatccttccaaaagctagttgagtttccacaccccactttcctaacaacctccgcattaaaccacctctccccaccctcgtcctccaaaaa |
123 |
Q |
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| T |
9366839 |
ccctccaaggatccttccaaaagctagttgaatttccacaccccactttcctgacaacctccgcattaaaccacctctccccaccctcatcctccaaaaa |
9366938 |
T |
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| Q |
124 |
agcaacatccttccaccatctagatatgtagctcggccacgaatcatcatcttccaccaacaaattacacactcgagtgccatacttctcaataagaacc |
223 |
Q |
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| T |
9366939 |
agcaacatccttccaccatctagatatgtagctcggccaagaaccatcatcttccaccaacaaattacacactcgagtgccatacttctcaataagaacc |
9367038 |
T |
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| Q |
224 |
tctttccacaac |
235 |
Q |
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| T |
9367039 |
tctttccacaac |
9367050 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 43804736 - 43804567
Alignment:
| Q |
64 |
ccccactttcctaacaacctccgcattaaaccacctctccccaccctcgtcctccaaaaaagcaacatccttccaccatctagatatgtagctcggccac |
163 |
Q |
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|||||| ||||||| |||| |||||||||||||||| | || | | ||||||| | || ||| ||||||||||||| | || ||| | || ||||| |
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| T |
43804736 |
ccccaccttcctaatgacctatgcattaaaccacctcttcgcatcacc-tcctccatataaacaatatccttccaccatatggagatgaatcttggccaa |
43804638 |
T |
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| Q |
164 |
gaatcatcatcttccaccaacaaattacacactcgagtgccatacttctcaataagaacctctttccacaa |
234 |
Q |
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| T |
43804637 |
gcaccatcaccttccacctacaaattaaacacccgagtatcgtacttctcaataagcacctatttccacaa |
43804567 |
T |
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