View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5461_high_41 (Length: 229)
Name: NF5461_high_41
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_high_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 6155749 - 6155562
Alignment:
| Q |
9 |
ttttgttcgattgtatcattttatatggccctccttctccaacacatttacgtcattgtgcgttgttatcctcccaatattaagtgtttattgtatagtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
6155749 |
ttttgttcgattgtatcattttatatggccctccttctcca--------------ttgtgcgttgttatcctcccaatattaagtgtttattgcatggtt |
6155664 |
T |
|
| Q |
109 |
cttaactaaaattactatagtttgttaactagtatggttcttaactaatataaagtgtttaagaatcatacggaaaacatctaagttttatcttttacta |
208 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6155663 |
cttaactaaaattactttagttagttaactagtatggttcttaactaatataaagggtttaagaatcatacgaaaaacatctaagttttatcttttacta |
6155564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University