View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5461_high_5 (Length: 529)

Name: NF5461_high_5
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5461_high_5
NF5461_high_5
[»] chr7 (8 HSPs)
chr7 (18-525)||(47298364-47298874)
chr7 (110-525)||(47291856-47292267)
chr7 (344-493)||(47243109-47243258)
chr7 (321-519)||(47283952-47284150)
chr7 (342-518)||(47267988-47268165)
chr7 (320-444)||(47257285-47257409)
chr7 (320-487)||(47279391-47279558)
chr7 (20-61)||(47291749-47291790)
[»] chr5 (1 HSPs)
chr5 (320-493)||(32731776-32731949)
[»] chr3 (1 HSPs)
chr3 (345-444)||(20519834-20519930)


Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 47298364 - 47298874
Alignment:
Q  18 agaaccgagccatactaacaaaaacttacttctctaattttgaccaaat----caatacnnnnnnnnnggtataatcaactgggcctaattaagagacta 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||| || |    ||||||         ||||||||||||||||||||||||||||||||    
T  47298364 agaaccgtgccatactaacaaaaacttacttctctaattttgactaattaagtcaatacaaaaaaag-ggtataatcaactgggcctaattaagagacta 47298462  T
Q  114 aaacagatgcaaagcaacctaaggctaaataaaacagccgaaaataataacaacaaagaataggggctgacagaattataatatgaaaacctatatacta 213  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47298463 aaacagatgcaaagcagcctaaggctaaataaaacagccgaaaataataaaaacaaagaataggggctgacagaattataatatgaaaacctatatacta 47298562  T
Q  214 gttaatatatcacaataacaaacaggtctttcattataattatatagcacaaaagcccccaactttatttaacagcaatcacgacattacaattttacaa 313  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  47298563 gttaatatatcacaataacaaacaggtctttcattatcattatatagcacacaagcccccaactttatttaacagcaatcacgacagtacaattttacaa 47298662  T
Q  314 actacaacaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctct 413  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47298663 actacaacaaactataaggtagacatcgcaaaactaggagcactcaatgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctct 47298762  T
Q  414 tcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagc 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  47298763 tcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccttttatattcttatatgggacgatataggttgctccaggaaaaggtccagc 47298862  T
Q  514 cccaccctttgc 525  Q
    |||||| |||||    
T  47298863 cccaccttttgc 47298874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 110 - 525
Target Start/End: Original strand, 47291856 - 47292267
Alignment:
Q  110 actaaaacagatgcaaagcaacctaaggctaaat-----aaaacagccgaaaataataacaacaaagaataggggctgacagaattataatatgaaaacc 204  Q
    |||||||||||||||||||| |||||||||||||     |||||||| || |||||||| ||||||||||||||||||| ||||||||||||| ||| ||    
T  47291856 actaaaacagatgcaaagcagcctaaggctaaattaaataaaacagctgataataataaaaacaaagaataggggctgatagaattataatattaaatcc 47291955  T
Q  205 tatatactagttaatatatcacaataacaaacaggtctttcattataattatatagcacaaaagcccccaactttatttaacagcaatcacgacattaca 304  Q
    || ||||||||||||||||| ||  |||||  ||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||     
T  47291956 tagatactagttaatatatctcacaaacaat-aggcctttcattatcattatatagcacacaagcccccaactttatttaacaggaatcacgacattac- 47292053  T
Q  305 attttacaaactacaacaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttg 404  Q
           ||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47292054 -------aaactacaacaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttg 47292146  T
Q  405 caaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292147 caaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaa 47292246  T
Q  505 tgttccagccccaccctttgc 525  Q
    ||||||||||||||| |||||    
T  47292247 tgttccagccccaccttttgc 47292267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 344 - 493
Target Start/End: Complemental strand, 47243258 - 47243109
Alignment:
Q  344 aaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggta 443  Q
    |||||||||||||||  |||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||| ||||||||||    
T  47243258 aaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggta 47243159  T
Q  444 acatcaaagtttcttctccatttatattcttatatgggacgatataggtt 493  Q
    | || ||   ||||||||| |||  ||||||||  ||||| |||||||||    
T  47243158 atattaacccttcttctccttttgcattcttatgcgggacaatataggtt 47243109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 321 - 519
Target Start/End: Complemental strand, 47284150 - 47283952
Alignment:
Q  321 caaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatc 420  Q
    |||||||||||||||| ||  |||||||||||||| ||| |||||| |||||||| ||||||| ||||| ||| |||||||  ||||||||||||||| |    
T  47284150 caaactataaggtagagatgacaaaactaggaccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataac 47284051  T
Q  421 ttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccacc 519  Q
    ||||||||  ||  ||||| |||| || |||  ||||||||| | |  |||||||| |||||  ||||| |||| |||||| || | ||||||||||||    
T  47284050 ttcagaggttaagaaaattagtaatattaaaccttcttctccttctgcattcttatgtgggattatatacgttgctccaggtaaaggtccagccccacc 47283952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 518
Target Start/End: Complemental strand, 47268165 - 47267988
Alignment:
Q  342 caaaactagga-ccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattg 440  Q
    ||||||||||| ||||| | | |||| | |||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| |     
T  47268165 caaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaacta 47268066  T
Q  441 gtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccac 518  Q
    |||| || |||  ||||||||| | || |||||||| ||||| |||||||| || ||||||||| |  ||||||||||    
T  47268065 gtaatatgaaaccttcttctccttctacattcttatgtgggatgatataggctgctccaggaaaaggcccagccccac 47267988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 320 - 444
Target Start/End: Complemental strand, 47257409 - 47257285
Alignment:
Q  320 acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat 419  Q
    |||||||||||||||||||     |||||||||||||||  |||||||| |||||||||||||||||| ||||| ||||| ||  |||||||||||||||    
T  47257409 acaaactataaggtagacaagatgaaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatat 47257310  T
Q  420 cttcagagggcaaacaaattggtaa 444  Q
    ||||||  ||||| |||||||||||    
T  47257309 cttcaggaggcaagcaaattggtaa 47257285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 487
Target Start/End: Complemental strand, 47279558 - 47279391
Alignment:
Q  320 acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat 419  Q
    |||||||||||||| || ||  |||||||||| ||| | | |||||| |||||||||||||||| ||||| ||| |||||||  |||||||||||||||     
T  47279558 acaaactataaggtggagatgacaaaactaggcccaattgttgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataa 47279459  T
Q  420 cttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgata 487  Q
    |||||||||  ||  ||||| |||| ||||||  ||||||||| | |  |||||||| ||||| ||||    
T  47279458 cttcagaggttaagaaaattagtaatatcaaaccttcttctccttctgcattcttatgtgggatgata 47279391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 47291749 - 47291790
Alignment:
Q  20 aaccgagccatactaacaaaaacttacttctctaattttgac 61  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  47291749 aaccgtgccatactaacaaaaacttacttctctaattttgac 47291790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 320 - 493
Target Start/End: Complemental strand, 32731949 - 32731776
Alignment:
Q  320 acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat 419  Q
    |||||||||||||||||||     |||||||||||||||  |||||||  |||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  32731949 acaaactataaggtagacaagatgaaactaggaccactcattgtaggacaattttggttaccaagcatatcatctaactctttagcaaacctcttcatat 32731850  T
Q  420 cttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggtt 493  Q
    |||||| |||||| |||||||| || || ||   ||||||||| |||  ||||||||  ||||| |||||||||    
T  32731849 cttcagggggcaagcaaattggaaatattaacccttcttctccttttgcattcttatgcgggacaatataggtt 32731776  T

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Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 345 - 444
Target Start/End: Complemental strand, 20519930 - 20519834
Alignment:
Q  345 aactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaa 444  Q
    ||||| |||| |||| |||||||||||   ||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||| ||||||||||    
T  20519930 aactatgacctctcgttgtaggatgat---ggttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggtaa 20519834  T

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