View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5461_high_6 (Length: 496)

Name: NF5461_high_6
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5461_high_6
NF5461_high_6
[»] chr8 (8 HSPs)
chr8 (170-490)||(3684790-3685109)
chr8 (1-51)||(3684622-3684672)
chr8 (435-494)||(1876534-1876593)
chr8 (435-489)||(44907218-44907273)
chr8 (454-496)||(9004993-9005035)
chr8 (459-495)||(5687284-5687320)
chr8 (435-495)||(24103103-24103163)
chr8 (465-493)||(38047692-38047720)
[»] chr1 (9 HSPs)
chr1 (435-491)||(31042999-31043055)
chr1 (435-494)||(34861264-34861323)
chr1 (435-491)||(48947202-48947258)
chr1 (435-494)||(3047862-3047921)
chr1 (435-494)||(16113914-16113973)
chr1 (435-493)||(4040889-4040947)
chr1 (454-496)||(10355098-10355140)
chr1 (435-493)||(33791791-33791849)
chr1 (454-495)||(46804895-46804936)
[»] chr4 (8 HSPs)
chr4 (435-494)||(31262911-31262969)
chr4 (435-494)||(22889255-22889314)
chr4 (435-494)||(22940919-22940978)
chr4 (453-495)||(27748434-27748476)
chr4 (435-493)||(49951742-49951800)
chr4 (435-493)||(50617492-50617550)
chr4 (454-495)||(53261552-53261593)
chr4 (454-493)||(47995807-47995847)
[»] chr5 (3 HSPs)
chr5 (454-496)||(31914163-31914205)
chr5 (435-494)||(34032142-34032201)
chr5 (445-495)||(36160313-36160363)
[»] chr2 (10 HSPs)
chr2 (454-496)||(39647844-39647886)
chr2 (435-494)||(8964387-8964446)
chr2 (436-494)||(21277548-21277606)
chr2 (441-491)||(28858102-28858152)
chr2 (435-496)||(6334724-6334785)
chr2 (435-496)||(9448448-9448509)
chr2 (454-495)||(16717603-16717644)
chr2 (435-496)||(33275945-33276006)
chr2 (435-496)||(37284938-37284999)
chr2 (454-494)||(25622529-25622568)
[»] chr7 (4 HSPs)
chr7 (458-494)||(5907819-5907855)
chr7 (435-494)||(43492254-43492313)
chr7 (454-495)||(44452113-44452154)
chr7 (435-495)||(33887904-33887964)
[»] scaffold0010 (1 HSPs)
scaffold0010 (435-494)||(26696-26755)
[»] chr6 (3 HSPs)
chr6 (454-489)||(26187517-26187552)
chr6 (435-493)||(27752642-27752700)
chr6 (435-495)||(29716817-29716877)
[»] chr3 (7 HSPs)
chr3 (435-494)||(48551035-48551094)
chr3 (435-493)||(46725653-46725711)
chr3 (435-493)||(48322258-48322316)
chr3 (465-494)||(3027067-3027096)
chr3 (454-495)||(46360619-46360660)
chr3 (435-496)||(50644127-50644188)
chr3 (434-494)||(45757924-45757984)
[»] scaffold1681 (1 HSPs)
scaffold1681 (454-495)||(671-712)
[»] scaffold0053 (1 HSPs)
scaffold0053 (434-494)||(5757-5817)


Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 170 - 490
Target Start/End: Original strand, 3684790 - 3685109
Alignment:
Q  170 gtaggatttttggtcacctatagtgttcctagttccttgtatattaaatatcctctcctctactttcaattccttgaatataaaaaatcatggagatggt 269  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3684790 gtaggatttttggtcacctttagtgttcctaattccttgtgtattaaatatcctctcctctactttcaattccttgaatataaaaaatcatggagatggt 3684889  T
Q  270 tcttgaatatattaaataataatttttctttatcttttgagttatatgtgtatattcatcatatagttagtattgctaggtttttctaattaaaacaagg 369  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  3684890 tcttggatatattaaata-taatttttctttatcttttgagttatatgtgtatattcatcatatagttagtattgctaggtttttctaattaaaataaag 3684988  T
Q  370 aacatgttaactagtgtctccgactctgagacattatttaaggaccttaaatggtaaatttttataaattgaaaaatttgacgcttttaaaaagtaatta 469  Q
    || ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3684989 aaaatgttaactagtgtctccgactccgagacactatttaagaaccttaaatggtaaatttttataaattgaaaaatttgacgcttttaaaaagtaatta 3685088  T
Q  470 cttaatttagaatgcttaaag 490  Q
     |||||||| || ||||||||    
T  3685089 tttaatttaaaaagcttaaag 3685109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3684622 - 3684672
Alignment:
Q  1 tatgcttgatccattcttcctttgattttgggcactaggagtgtggtagga 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3684622 tatgcttgatccattcttcctttgattttgggcaataggagtgtggtagga 3684672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Original strand, 1876534 - 1876593
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    |||||||||| ||||||  ||| ||| | |||||||||||||||| ||||||||||||||    
T  1876534 aaattgaaaattttgacattttaaaagaataattacttaatttagcatgcttaaagagtg 1876593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 489
Target Start/End: Complemental strand, 44907273 - 44907218
Alignment:
Q  435 aaattgaaaaa-tttgacgcttttaaaaagtaattacttaatttagaatgcttaaa 489  Q
    ||||||||||| ||||||  ||||||||| |||||||||||||||||| |||||||    
T  44907273 aaattgaaaaagtttgacatttttaaaaaataattacttaatttagaaagcttaaa 44907218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 496
Target Start/End: Complemental strand, 9005035 - 9004993
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtgtt 496  Q
    ||||||||| |||||||||||||||||||  ||||||||||||    
T  9005035 ttttaaaaaataattacttaatttagaatatttaaagagtgtt 9004993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 5687320 - 5687284
Alignment:
Q  459 aaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  5687320 aaaaataattacttaatttacaatgcttaaagagtgt 5687284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 495
Target Start/End: Original strand, 24103103 - 24103163
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    |||| |||| |||||||  ||| ||||| ||||| |||| |||||||||||||||||||||    
T  24103103 aaatcgaaacatttgaccttttaaaaaaataatttcttattttagaatgcttaaagagtgt 24103163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 493
Target Start/End: Original strand, 38047692 - 38047720
Alignment:
Q  465 aattacttaatttagaatgcttaaagagt 493  Q
    |||||||||||||||||||||||||||||    
T  38047692 aattacttaatttagaatgcttaaagagt 38047720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 435 - 491
Target Start/End: Complemental strand, 31043055 - 31042999
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaaga 491  Q
    |||||||||| ||||||  ||||||||| ||||||||||||||||||||||||||||    
T  31043055 aaattgaaaactttgacatttttaaaaaataattacttaatttagaatgcttaaaga 31042999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 494
Target Start/End: Original strand, 34861264 - 34861323
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    |||||||||  ||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  34861264 aaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaaagagtg 34861323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 491
Target Start/End: Complemental strand, 48947258 - 48947202
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaaga 491  Q
    |||||||||| ||||||  ||||||||| |||||||||||||||| |||||||||||    
T  48947258 aaattgaaaactttgacatttttaaaaaataattacttaatttagtatgcttaaaga 48947202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Complemental strand, 3047921 - 3047862
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    |||| ||||||||||||  ||||||| |  ||||||||||||||| ||||||||||||||    
T  3047921 aaatcgaaaaatttgacatttttaaagaacaattacttaatttagcatgcttaaagagtg 3047862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Complemental strand, 16113973 - 16113914
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    |||||||||| ||||||  ||| ||||| |||||||||||| ||| ||||||||||||||    
T  16113973 aaattgaaaactttgacattttgaaaaaataattacttaatatagtatgcttaaagagtg 16113914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 4040947 - 4040889
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagt 493  Q
    |||||||||| |||||| ||||||   | ||||||||||||||| ||||||||||||||    
T  4040947 aaattgaaaactttgacacttttatgtaataattacttaatttaaaatgcttaaagagt 4040889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 496
Target Start/End: Original strand, 10355098 - 10355140
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtgtt 496  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||    
T  10355098 ttttaaaaaataattactttatttagaatacttaaagagtgtt 10355140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 33791791 - 33791849
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagt 493  Q
    |||||||||||||||||  ||| ||| | |||||||||||||||| || ||||||||||    
T  33791791 aaattgaaaaatttgacattttaaaagaataattacttaatttagcatacttaaagagt 33791849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Original strand, 46804895 - 46804936
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    ||||||||| | |||| |||||||||||||||||||||||||    
T  46804895 ttttaaaaaattattaattaatttagaatgcttaaagagtgt 46804936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 494
Target Start/End: Complemental strand, 31262969 - 31262911
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    |||| ||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  31262969 aaatcgaaaactttgacatttttaaaaa-taattacttaatttagaatgcttaaagagtg 31262911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Complemental strand, 22889314 - 22889255
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    |||||||||||||| ||  |||||||||  ||||||||||||||||| | ||||||||||    
T  22889314 aaattgaaaaatttaacatttttaaaaaacaattacttaatttagaaagtttaaagagtg 22889255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Complemental strand, 22940978 - 22940919
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    |||||||||||||| ||  |||||||||  ||||||||||||||||| | ||||||||||    
T  22940978 aaattgaaaaatttaacatttttaaaaaacaattacttaatttagaaagtttaaagagtg 22940919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 453 - 495
Target Start/End: Complemental strand, 27748476 - 27748434
Alignment:
Q  453 cttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    |||||||||| |||||||||| ||||||||| |||||||||||    
T  27748476 cttttaaaaaataattacttagtttagaatgtttaaagagtgt 27748434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 49951742 - 49951800
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagt 493  Q
    |||||||||| ||||||  ||| ||| | |||||||||||||||| |||||||||||||    
T  49951742 aaattgaaaactttgacattttaaaagaataattacttaatttagcatgcttaaagagt 49951800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 50617550 - 50617492
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagt 493  Q
    |||||||||| ||||||  ||| ||||| ||||||||||||||| |||| |||||||||    
T  50617550 aaattgaaaagtttgacattttaaaaaaataattacttaatttataatgtttaaagagt 50617492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 53261593 - 53261552
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    ||||||| | |||||||||||||||| |||||||||||||||    
T  53261593 ttttaaagaataattacttaatttagcatgcttaaagagtgt 53261552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 493
Target Start/End: Original strand, 47995807 - 47995847
Alignment:
Q  454 ttttaaaa-agtaattacttaatttagaatgcttaaagagt 493  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  47995807 ttttaaaagagtaattactaaatttagaatgcttaaagagt 47995847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 496
Target Start/End: Complemental strand, 31914205 - 31914163
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtgtt 496  Q
    ||||||| | |||||||||||||||||||||||||||||||||    
T  31914205 ttttaaagaataattacttaatttagaatgcttaaagagtgtt 31914163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Original strand, 34032142 - 34032201
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    ||||||||| |||| ||  ||||||| | |||||||||| ||||||||||||||||||||    
T  34032142 aaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaaagagtg 34032201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 445 - 495
Target Start/End: Complemental strand, 36160363 - 36160313
Alignment:
Q  445 atttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    |||||||  ||||||||| ||||| |||| |||||||||||||||||||||    
T  36160363 atttgacttttttaaaaaataattgcttattttagaatgcttaaagagtgt 36160313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 496
Target Start/End: Original strand, 39647844 - 39647886
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtgtt 496  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    
T  39647844 ttttaaaaaataattacttaatttagaatgtttaaagagtgtt 39647886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Complemental strand, 8964446 - 8964387
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    ||||||||| |||| ||  ||||||| | |||||||||||||||||||||||||| ||||    
T  8964446 aaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaaacagtg 8964387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 494
Target Start/End: Complemental strand, 21277606 - 21277548
Alignment:
Q  436 aattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    ||||||||| ||||||  ||| ||||| ||||||||||||||| ||| |||||||||||    
T  21277606 aattgaaaagtttgacattttaaaaaaataattacttaatttaaaatacttaaagagtg 21277548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 441 - 491
Target Start/End: Complemental strand, 28858152 - 28858102
Alignment:
Q  441 aaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaaga 491  Q
    |||||||||||  ||||||| | || |||||||||||||||||||||||||    
T  28858152 aaaaatttgacatttttaaagaatatttacttaatttagaatgcttaaaga 28858102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 496
Target Start/End: Original strand, 6334724 - 6334785
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtgtt 496  Q
    |||||||||| ||||||  ||||||||| |||||  ||||||||| ||| ||||||||||||    
T  6334724 aaattgaaaactttgacatttttaaaaaataattttttaatttagcatgtttaaagagtgtt 6334785  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 496
Target Start/End: Complemental strand, 9448509 - 9448448
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtgtt 496  Q
    |||||||||| ||||||  ||||||||| ||| ||||||||||||||| ||| |||| ||||    
T  9448509 aaattgaaaagtttgacagttttaaaaaataactacttaatttagaatactttaagaatgtt 9448448  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 16717644 - 16717603
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    ||||||| | |||||||||| |||||||||||||||||||||    
T  16717644 ttttaaagaataattacttattttagaatgcttaaagagtgt 16717603  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 496
Target Start/End: Original strand, 33275945 - 33276006
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtgtt 496  Q
    ||||||||| |||| ||  ||||||||| ||||| |||  ||||||||||||||||||||||    
T  33275945 aaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtgtt 33276006  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 496
Target Start/End: Original strand, 37284938 - 37284999
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtgtt 496  Q
    |||||||||||||| |   ||||||||| ||||||||||||||| |||  ||||||||||||    
T  37284938 aaattgaaaaatttaagatttttaaaaaataattacttaatttaaaatatttaaagagtgtt 37284999  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 494
Target Start/End: Complemental strand, 25622568 - 25622529
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  25622568 ttttaaaaa-taattacttaatttagaatgtttaaagagtg 25622529  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 494
Target Start/End: Complemental strand, 5907855 - 5907819
Alignment:
Q  458 aaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    ||||| |||||||||||||||||||||||||||||||    
T  5907855 aaaaaataattacttaatttagaatgcttaaagagtg 5907819  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Original strand, 43492254 - 43492313
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    |||||| ||| ||||||  || |||| | |||||||||||||||||||||||||||||||    
T  43492254 aaattgtaaattttgacatttctaaagaataattacttaatttagaatgcttaaagagtg 43492313  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Original strand, 44452113 - 44452154
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    ||||||| | |||||||||||||||||||| |||||||||||    
T  44452113 ttttaaataataattacttaatttagaatgtttaaagagtgt 44452154  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 495
Target Start/End: Original strand, 33887904 - 33887964
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    ||||||||| |||||||  ||||||| | |||||| ||| ||| |||||||||||||||||    
T  33887904 aaattgaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtgt 33887964  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Complemental strand, 26755 - 26696
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    |||||||||| ||||||  ||| ||| | |||||||||||||||| ||||||||||||||    
T  26755 aaattgaaaactttgacattttaaaataataattacttaatttagcatgcttaaagagtg 26696  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 489
Target Start/End: Original strand, 26187517 - 26187552
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaa 489  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26187517 ttttaaaaattaattacttaatttagaatgcttaaa 26187552  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 27752700 - 27752642
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagt 493  Q
    |||||||||| ||||||  || || ||| |||||||||||||||||||| |||||||||    
T  27752700 aaattgaaaactttgacatttgtataaaataattacttaatttagaatgtttaaagagt 27752642  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 495
Target Start/End: Original strand, 29716817 - 29716877
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    |||||||||| ||||||  ||| ||||| ||||| || ||||||||||||||||| |||||    
T  29716817 aaattgaaaactttgacattttaaaaaaataattgctgaatttagaatgcttaaaaagtgt 29716877  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 494
Target Start/End: Complemental strand, 48551094 - 48551035
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    |||||||||| ||||||  ||||||| | ||||| |||||||||| ||||||||||||||    
T  48551094 aaattgaaaactttgacatttttaaagaataatttcttaatttagcatgcttaaagagtg 48551035  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 46725711 - 46725653
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagt 493  Q
    |||||||||| ||| ||  ||||| ||| ||| ||||||||||||||||||||||||||    
T  46725711 aaattgaaaattttaacatttttataaaataactacttaatttagaatgcttaaagagt 46725653  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 493
Target Start/End: Original strand, 48322258 - 48322316
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagt 493  Q
    |||| |||| |||||||  ||| ||||| |||||||||| |||||||||||||||||||    
T  48322258 aaatcgaaacatttgactttttaaaaaaataattacttattttagaatgcttaaagagt 48322316  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 494
Target Start/End: Original strand, 3027067 - 3027096
Alignment:
Q  465 aattacttaatttagaatgcttaaagagtg 494  Q
    ||||||||||||||||||||||||||||||    
T  3027067 aattacttaatttagaatgcttaaagagtg 3027096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Original strand, 46360619 - 46360660
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||    
T  46360619 ttttaaatagtaattacctaatttataatgcttaaagagtgt 46360660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 496
Target Start/End: Complemental strand, 50644188 - 50644127
Alignment:
Q  435 aaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtgtt 496  Q
    ||||| |||||||||||  ||||||||| ||| |||||||||||  || |||||||||||||    
T  50644188 aaattaaaaaatttgacatttttaaaaaataactacttaatttaatatacttaaagagtgtt 50644127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 45757984 - 45757924
Alignment:
Q  434 taaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    ||||||||||| ||||||  ||||||| | ||||| |||||||||  ||||||||||||||    
T  45757984 taaattgaaaactttgacatttttaaagaataattgcttaatttaacatgcttaaagagtg 45757924  T

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Target: scaffold1681 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1681
Description:

Target: scaffold1681; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 712 - 671
Alignment:
Q  454 ttttaaaaagtaattacttaatttagaatgcttaaagagtgt 495  Q
    ||||||| | |||||||||| |||||||||||||||||||||    
T  712 ttttaaacactaattacttattttagaatgcttaaagagtgt 671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 5817 - 5757
Alignment:
Q  434 taaattgaaaaatttgacgcttttaaaaagtaattacttaatttagaatgcttaaagagtg 494  Q
    ||||||||||| ||||||  ||||||| |  |||||||||||||| ||| |||||||||||    
T  5817 taaattgaaaactttgacatttttaaagaaaaattacttaatttaaaattcttaaagagtg 5757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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