View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_low_11 (Length: 444)
Name: NF5461_low_11
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 36714923 - 36714499
Alignment:
| Q |
1 |
aacagtaatgaaaatctttatttaattcttttgaaagtttcatcattatattaagtctttagttaattattttaaaacaaatttgtttgatttgacatag |
100 |
Q |
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| T |
36714923 |
aacagtaatgaaagtctttatttaattcttttaaaagtttcatcattatattaagtctttagttaattattttaaaacaaatttgtttgatttgacatag |
36714824 |
T |
|
| Q |
101 |
tcacgtgtccgatttgacagaatcaagatgaaccattatgagtttgtaaaatctaacaaaacaacgtacattctaaagtttaaacaaaacaaaatcacca |
200 |
Q |
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| T |
36714823 |
tcacgtgtccgatttgacagaatcacgatgaaccattatgagtttgtaaaatctaacaaaacaacgtacattctaaagtttgaacaaaacaaaatcacca |
36714724 |
T |
|
| Q |
201 |
cgtcaccatgatttcagaaaaagacattgataccaaacatgttaatataagtgacagattttaatgaaacattacatcacttatcaatgaccaacaacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36714723 |
cgtcaccatgatttcagaaaaagacattgataccaaacatgttaatataagtgacagattttaatgaaacattacatcacttatcaatgaccaacaacat |
36714624 |
T |
|
| Q |
301 |
ttcattctttgaacaacaacctaataaaataaaaaatggaagcaatggttggtaccttgttattgttgtgtgaaagctggtactaactttgaatgaaggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36714623 |
ttcattctttgaacaacaacctaataaaataaaaaatggaagcaatggttggtaccttgttattgttgtgtgaaagctgctactaactttgaatgaaggt |
36714524 |
T |
|
| Q |
401 |
tgttgcaggaaagagaagagaaata |
425 |
Q |
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| T |
36714523 |
tgttgtaggaaagagaagagaaata |
36714499 |
T |
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