View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_low_13 (Length: 427)
Name: NF5461_low_13
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 34978610 - 34979035
Alignment:
| Q |
18 |
aatacaacgactaattaattttacctacaatgagagatatgaaaccctctccactatagacagag----------cctttataggccaatgtcgtcttct |
107 |
Q |
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| T |
34978610 |
aatacaacgactaattaattttacctacaatgagagatatgaaaccctctccactatagacagagtcttttgtcacctttataggccaatgtcgtcttct |
34978709 |
T |
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| Q |
108 |
aaaatattggcatcatctgtgtaaacagaatgnnnnnnnttacgatcaactagttatgcttgacatcatttgtaagcataaatgactaaactcaacccat |
207 |
Q |
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| T |
34978710 |
aaaatattggcatcatctgtgtaaacagaatgaaaaaaattacgatcaactagttatgcttgacatcatttgtaagcataaatgactaaactcaacccat |
34978809 |
T |
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| Q |
208 |
taagtatatgtttgatttgaagtttaaggaaatggatcctttcggttgg-nnnnnnnnntgaagaaatagcttagaataaacccatt------------- |
293 |
Q |
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| T |
34978810 |
taagtatatgtttgatttgaagtttaaggaaatggatcctttcggttggaaaaaaaaaatgaagaaatagcttagaataaggcaaattctatggtacacc |
34978909 |
T |
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| Q |
294 |
-attaagtatccgtatatatattctatctatctatatttaaaataaacttgatgatgtggcatctctagattaacatctttgtaaactaaacttaggttt |
392 |
Q |
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| T |
34978910 |
cattaagtatccgtatatatattctatctatctatatttaaaataaacttgatgatgtggcatctctagattaacatctttgtaaactaaacttaggttt |
34979009 |
T |
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| Q |
393 |
attctaagctagaattatgatgatgt |
418 |
Q |
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| T |
34979010 |
attctaagctagaattatgatgatgt |
34979035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 418
Target Start/End: Complemental strand, 39770083 - 39770002
Alignment:
| Q |
337 |
aaacttgatgatgtggcatctctagattaacatctttgtaaactaaacttaggtt-tattctaagctagaattatgatgatgt |
418 |
Q |
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| T |
39770083 |
aaacttgatgatgtggcatctctagattaacatctttgtaaact-aactttggttgtatgttaagctagaattatgatgatgt |
39770002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 15802536 - 15802594
Alignment:
| Q |
321 |
tatctatatttaaaataaacttgatgatgtggcatctctagattaacatctttgtaaac |
379 |
Q |
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| T |
15802536 |
tatctgtatataaaacaagcttgatgatgtggcatctctagattaccatctttgtaaac |
15802594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 418
Target Start/End: Complemental strand, 30087993 - 30087912
Alignment:
| Q |
337 |
aaacttgatgatgtggcatctctagattaacatctttgtaaactaaacttaggtttattctaagctagaattatgatgatgt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||| | | ||| |||||||||||||||||||||| |
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| T |
30087993 |
aaacttgatgatgtggcatctctagattaacatctttgtagacaaaatatggaactatattaagctagaattatgatgatgt |
30087912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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