View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5461_low_14 (Length: 413)

Name: NF5461_low_14
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5461_low_14
NF5461_low_14
[»] chr5 (22 HSPs)
chr5 (216-412)||(28031165-28031360)
chr5 (215-367)||(36289978-36290130)
chr5 (176-269)||(10898762-10898854)
chr5 (170-238)||(117441-117509)
chr5 (220-312)||(42858106-42858198)
chr5 (220-314)||(31906255-31906349)
chr5 (170-252)||(35138968-35139050)
chr5 (215-314)||(6951295-6951394)
chr5 (213-315)||(9818729-9818832)
chr5 (205-280)||(35073418-35073493)
chr5 (209-312)||(39097244-39097347)
chr5 (170-235)||(15873934-15873999)
chr5 (221-314)||(18851078-18851171)
chr5 (215-312)||(32980541-32980638)
chr5 (200-312)||(38845441-38845554)
chr5 (219-338)||(11648054-11648171)
chr5 (206-262)||(12208814-12208870)
chr5 (183-263)||(37877105-37877185)
chr5 (218-321)||(28110431-28110534)
chr5 (186-231)||(4306591-4306636)
chr5 (218-318)||(3993802-3993902)
chr5 (204-268)||(36639979-36640043)
[»] chr3 (19 HSPs)
chr3 (162-239)||(7262885-7262962)
chr3 (208-277)||(4526165-4526234)
chr3 (7-52)||(7263086-7263130)
chr3 (209-277)||(31708223-31708291)
chr3 (211-315)||(42913049-42913153)
chr3 (170-277)||(3776555-3776662)
chr3 (186-277)||(41596110-41596201)
chr3 (170-277)||(46853479-46853586)
chr3 (170-268)||(35253412-35253510)
chr3 (224-338)||(52364023-52364137)
chr3 (205-266)||(43661883-43661944)
chr3 (209-312)||(25359558-25359661)
chr3 (200-277)||(33791980-33792058)
chr3 (218-300)||(47356238-47356320)
chr3 (170-235)||(1441352-1441417)
chr3 (206-277)||(5406939-5407008)
chr3 (216-268)||(29305928-29305980)
chr3 (200-240)||(31428635-31428675)
chr3 (221-277)||(32523336-32523392)
[»] chr6 (27 HSPs)
chr6 (171-317)||(434183-434329)
chr6 (171-277)||(34620919-34621025)
chr6 (171-277)||(34748356-34748462)
chr6 (186-268)||(882728-882810)
chr6 (212-277)||(17225885-17225950)
chr6 (200-312)||(957598-957710)
chr6 (189-277)||(31305811-31305899)
chr6 (216-312)||(3482044-3482140)
chr6 (205-277)||(4910941-4911013)
chr6 (170-236)||(3798974-3799040)
chr6 (189-255)||(8856362-8856428)
chr6 (209-271)||(25195350-25195412)
chr6 (176-277)||(9505803-9505904)
chr6 (183-299)||(8854931-8855046)
chr6 (170-222)||(28466929-28466981)
chr6 (170-222)||(34736752-34736804)
chr6 (170-277)||(1485091-1485198)
chr6 (209-268)||(8860546-8860605)
chr6 (170-277)||(34027362-34027469)
chr6 (211-249)||(6895936-6895974)
chr6 (224-309)||(12126163-12126248)
chr6 (206-251)||(12766640-12766685)
chr6 (174-235)||(25195126-25195186)
chr6 (183-268)||(26280647-26280731)
chr6 (186-251)||(32888918-32888983)
chr6 (216-312)||(993956-994052)
chr6 (183-255)||(3289800-3289871)
[»] chr8 (25 HSPs)
chr8 (165-310)||(16972004-16972149)
chr8 (160-277)||(32927925-32928042)
chr8 (224-312)||(13384653-13384741)
chr8 (160-268)||(32994175-32994285)
chr8 (160-277)||(26100081-26100198)
chr8 (216-314)||(10982277-10982375)
chr8 (216-268)||(32736504-32736556)
chr8 (205-277)||(35495293-35495365)
chr8 (183-277)||(38335819-38335913)
chr8 (219-268)||(5859057-5859106)
chr8 (220-312)||(15677810-15677903)
chr8 (224-269)||(32681303-32681348)
chr8 (215-312)||(38868496-38868593)
chr8 (206-262)||(13929678-13929734)
chr8 (209-277)||(35495023-35495091)
chr8 (206-265)||(2924822-2924881)
chr8 (209-268)||(4662887-4662946)
chr8 (216-271)||(38868782-38868837)
chr8 (215-253)||(32101130-32101168)
chr8 (186-251)||(4554565-4554630)
chr8 (170-271)||(7601896-7601996)
chr8 (183-231)||(10368044-10368092)
chr8 (209-277)||(37684438-37684506)
chr8 (216-312)||(40769358-40769454)
chr8 (200-240)||(43492212-43492252)
[»] chr7 (13 HSPs)
chr7 (170-267)||(45557408-45557505)
chr7 (170-277)||(40491611-40491718)
chr7 (172-268)||(25156242-25156338)
chr7 (170-240)||(12306793-12306863)
chr7 (160-277)||(1442606-1442721)
chr7 (226-336)||(32938687-32938797)
chr7 (170-232)||(33853429-33853491)
chr7 (218-268)||(38123659-38123709)
chr7 (186-240)||(40561719-40561773)
chr7 (186-310)||(9183876-9184000)
chr7 (209-255)||(32295239-32295285)
chr7 (184-277)||(45005053-45005146)
chr7 (216-268)||(42816459-42816511)
[»] scaffold0361 (1 HSPs)
scaffold0361 (170-280)||(14059-14169)
[»] chr4 (17 HSPs)
chr4 (183-315)||(25927303-25927433)
chr4 (209-312)||(32818354-32818457)
chr4 (186-312)||(47144213-47144338)
chr4 (209-314)||(35065059-35065164)
chr4 (205-313)||(8604602-8604710)
chr4 (215-255)||(16552010-16552050)
chr4 (170-250)||(33843771-33843851)
chr4 (209-268)||(21691196-21691255)
chr4 (216-347)||(53913568-53913699)
chr4 (198-277)||(10185227-10185307)
chr4 (183-251)||(22683923-22683991)
chr4 (220-312)||(39386631-39386723)
chr4 (242-277)||(30357545-30357580)
chr4 (205-252)||(55927750-55927797)
chr4 (162-240)||(1023855-1023933)
chr4 (215-312)||(20718615-20718712)
chr4 (183-251)||(25319107-25319175)
[»] chr1 (25 HSPs)
chr1 (177-261)||(35961417-35961501)
chr1 (170-277)||(7524146-7524253)
chr1 (209-344)||(28083872-28084007)
chr1 (209-275)||(1514378-1514444)
chr1 (186-277)||(48548975-48549064)
chr1 (207-314)||(3016158-3016265)
chr1 (215-277)||(11049283-11049345)
chr1 (183-277)||(34915099-34915193)
chr1 (186-310)||(52339689-52339813)
chr1 (186-265)||(1233350-1233429)
chr1 (209-255)||(30557557-30557603)
chr1 (215-312)||(3416078-3416175)
chr1 (227-276)||(7790644-7790693)
chr1 (219-268)||(30850393-30850442)
chr1 (220-268)||(47321902-47321950)
chr1 (210-277)||(213522-213589)
chr1 (170-277)||(11817262-11817368)
chr1 (218-273)||(14334056-14334111)
chr1 (216-271)||(34721831-34721886)
chr1 (205-268)||(38797610-38797672)
chr1 (170-240)||(5268289-5268359)
chr1 (257-319)||(6590008-6590070)
chr1 (215-277)||(10324928-10324990)
chr1 (183-268)||(27849181-27849267)
chr1 (205-267)||(52263627-52263689)
[»] chr2 (21 HSPs)
chr2 (183-254)||(16518834-16518905)
chr2 (170-262)||(1976809-1976901)
chr2 (170-277)||(4894102-4894209)
chr2 (209-312)||(33019140-33019243)
chr2 (205-271)||(8800678-8800744)
chr2 (209-277)||(11504046-11504113)
chr2 (183-250)||(15220819-15220886)
chr2 (170-265)||(16519489-16519584)
chr2 (186-240)||(680251-680305)
chr2 (215-268)||(42982586-42982639)
chr2 (176-277)||(44439287-44439388)
chr2 (225-277)||(33502270-33502322)
chr2 (205-300)||(10644613-10644708)
chr2 (222-277)||(33961978-33962033)
chr2 (243-314)||(45066438-45066509)
chr2 (183-277)||(11759817-11759911)
chr2 (186-240)||(40401604-40401658)
chr2 (205-277)||(3352109-3352181)
chr2 (183-231)||(3853932-3853980)
chr2 (209-277)||(32596024-32596092)
chr2 (183-235)||(44412151-44412203)
[»] scaffold0360 (1 HSPs)
scaffold0360 (209-262)||(13174-13227)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 216 - 412
Target Start/End: Original strand, 28031165 - 28031360
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattatg 315  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  28031165 atacattcatgtaaaagtaagttgatctataaatttgtgt-taaaagtcaattatataatcaaaaaatataaattttaacttcaaatagaatcaattatg 28031263  T
Q  316 aatacattattaattctactcgaaaacaaacatacacattagaatcaattttggtctcaagaaccaaacatataggagctttaaaatttagttgatg 412  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||||||||||    
T  28031264 aatacataattaattctactcgaaaacaaacatacacattagaatcaattttggtctctagaaccaaatatacaggagctttaaaaattagttgatg 28031360  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 367
Target Start/End: Complemental strand, 36290130 - 36289978
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattat 314  Q
    ||||||||| ||||||| |||||||| |||||||| ||||||| |||||||| |||  ||||| ||   | |||| |||||||||| || ||||||||||    
T  36290130 gatacattcgtgtaaaactgagttgaactataaatatgtgtctgaaaatcaaatatggaatcaaaactaacaaatcttaacttcaagtataatcaattat 36290031  T
Q  315 gaatacattattaattctactcgaaaacaaacatacacattagaatcaatttt 367  Q
    |||| ||  ||||||||||||||| ||||| || | | || ||||||||||||    
T  36290030 gaatgcaacattaattctactcgacaacaaccaaatatatcagaatcaatttt 36289978  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 10898854 - 10898762
Alignment:
Q  176 tggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    |||||| |||||||||||||| | | || ||||||||| ||||  |||||||||||||||||||| | |||||||||||| |||||||||||||    
T  10898854 tggctataagtgagttgaaggcaaattgctttatgtttggatag-ttcatgtaaaagtgagttgaacaataaatttgtgtgtaaaaatcaatta 10898762  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 117441 - 117509
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagtt 238  Q
    |||||||| |||||||||||||||||||| |||| || |||||| |||||||  |||||||||||||||    
T  117441 tgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 117509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 42858198 - 42858106
Alignment:
Q  220 attcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||| | ||  |  ||||  ||||||||| |||||||||||    
T  42858198 attcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaatt 42858106  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 31906349 - 31906255
Alignment:
Q  220 attcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattat 314  Q
    ||||||||||||||||||||| |||||||||| | |  ||| |||||||||||||||| ||  || ||||  || |||||| |||||||||||||    
T  31906349 attcatgtaaaagtgagttgaactataaatttatatgaaaatatcaattatataatcaaaagttacaaatcatagcttcaagtaaaatcaattat 31906255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 35138968 - 35139050
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttg 252  Q
    |||||||| ||| || ||||||||||||| |||| ||||||||  ||||||||||| | |||||||||||| | |||||||||    
T  35138968 tgattctgtctaaaattgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaataaatttg 35139050  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 314
Target Start/End: Original strand, 6951295 - 6951394
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattat 314  Q
    |||| |||||||||||||||| ||||  ||||||||| ||| || |||||||||||| ||||| ||  || ||||  ||||||||| || ||||||||||    
T  6951295 gataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaattat 6951394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 9818832 - 9818729
Alignment:
Q  213 ttgatacattcatgtaaaagtgagttgatctataaatttgtgtct-aaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaat 311  Q
    ||||| ||||||| |||||||||||||| |||||||||||||| | ||||||||||| || ||||| ||  || ||||  || |||||| || |||||||    
T  9818832 ttgatgcattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaat 9818733  T
Q  312 tatg 315  Q
    ||||    
T  9818732 tatg 9818729  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 35073418 - 35073493
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataa 280  Q
    |||||||||| ||||||| || |||||||||||| | || |||||||| || | |||||||||| |||||||||||    
T  35073418 tttatgtttttatacatttatataaaagtgagttaaactttaaatttgagtgtcaaaatcaattctataatcataa 35073493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 39097347 - 39097244
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatc 308  Q
    ||||||||| |||| ||||||||||  ||||| || ||||||| ||| | ||||||||||||||||| | ||  || |||||||| |||||| || ||||    
T  39097347 tgttttgattcatttatgtaaaagtaggttgaactttaaatttatgtgtgaaaatcaattatataattaaaagttacaaattttagcttcaagtagaatc 39097248  T
Q  309 aatt 312  Q
    ||||    
T  39097247 aatt 39097244  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 15873934 - 15873999
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtga 235  Q
    |||||||||| | || |||||||||||||||||  ||||||||| |||| | ||||||||||||||    
T  15873934 tgattctggcaaaaattgagttgaaggtataatagtttatgtttggatatactcatgtaaaagtga 15873999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 18851078 - 18851171
Alignment:
Q  221 ttcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattat 314  Q
    |||||||||||||||||| | |||||||| ||||| | |||||||||| |||||||| ||  || ||||  || |||||| || ||||||||||    
T  18851078 ttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattat 18851171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 32980638 - 32980541
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    ||||||||||||||||||| | | || | |||||||||  | ||||||||| || || ||||| ||  ||||||| |||||||||| |||||||||||    
T  32980638 gatacattcatgtaaaagtaactcgagcaataaatttgaatgtaaaaatcatttgtagaatcaaaagatataaatcttaacttcaagtaaaatcaatt 32980541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 38845554 - 38845441
Alignment:
Q  200 aatgttttatgttttgatacattcatgtaaaa-gtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttc 298  Q
    |||| ||| ||||| |||| |||||||||||| ||||||| | ||||| |||||||| | |||||||||| || ||||| ||| || |||| ||| ||||    
T  38845554 aatgatttgtgtttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttc 38845455  T
Q  299 aaataaaatcaatt 312  Q
    || || ||||||||    
T  38845454 aagtagaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 338
Target Start/End: Complemental strand, 11648171 - 11648054
Alignment:
Q  219 cattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattatgaat 318  Q
    ||||||||||||| ||||||||  ||||  || |||| | |||||||||| |||||||| || ||| |||| ||| |||||| || |||||||| | |||    
T  11648171 cattcatgtaaaattgagttgaattata--ttcgtgtgtgaaaatcaattttataatcaaaatgtacaaatcttagcttcaagtagaatcaattttaaat 11648074  T
Q  319 acattattaattctactcga 338  Q
     ||| || ||||||||||||    
T  11648073 gcataataaattctactcga 11648054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 12208814 - 12208870
Alignment:
Q  206 ttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaa 262  Q
    ||||||||||||||||||||||||||||| |||||   ||||||||| | |||||||    
T  12208814 ttatgttttgatacattcatgtaaaagtgggttgaaaaataaatttgaggctaaaaa 12208870  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 37877185 - 37877105
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaat 263  Q
    |||| ||||||||||| | || ||||||||| ||| ||||||| |||||||||||| | | ||||||||| | ||||||||    
T  37877185 aagtcagttgaaggtagagtggtttatgtttggattcattcatataaaagtgagttaaacaataaatttgaggctaaaaat 37877105  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 321
Target Start/End: Original strand, 28110431 - 28110534
Alignment:
Q  218 acattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattatgaa 317  Q
    ||||| || |||||||||||| | |||||||||||||| | |||||||||| || ||||| ||  || ||||   ||||| |||||||||||||| | ||    
T  28110431 acatttatataaaagtgagttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagttacaaatcccaacttaaaataaaatcaattttaaa 28110530  T
Q  318 taca 321  Q
    ||||    
T  28110531 taca 28110534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 4306636 - 4306591
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaa 231  Q
    ||||||||| ||| |||| ||||||||| |||||||||||||||||    
T  4306636 tgagttgaatgtaaaatgatttatgtttggatacattcatgtaaaa 4306591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 318
Target Start/End: Complemental strand, 3993902 - 3993802
Alignment:
Q  218 acattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattatgaa 317  Q
    |||||||||||||| ||| | || |||||||||||||| ||||||| || | || ||||| ||| || | ||| ||| || ||||| ||||||| |||||    
T  3993902 acattcatgtaaaaatgaatcgaactataaatttgtgtgtaaaaataaaatttagaatcagaaactacagattctaattttaaatataatcaatcatgaa 3993803  T
Q  318 t 318  Q
    |    
T  3993802 t 3993802  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 36640043 - 36639979
Alignment:
Q  204 ttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    |||||||||||||||  |||||||||||||||| ||| |  |||||||| || |||||| |||||    
T  36640043 ttttatgttttgataggttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaatt 36639979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 7262962 - 7262885
Alignment:
Q  162 tgtagaaatgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttg 239  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7262962 tgtagaaatgattctggatagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttg 7262885  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 4526234 - 4526165
Alignment:
Q  208 atgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    ||||||||  ||||| ||||||||||| ||||| |||||||||||||| |||||||||||| || |||||    
T  4526234 atgttttgtgacatttatgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaattttaaaatca 4526165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 7263130 - 7263086
Alignment:
Q  7 cattgttgctttgcgtgattccaaattgaaggttatcaattaactc 52  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  7263130 cattgttgctttgcgtgattccaaattgaagg-tatcaattaactc 7263086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 31708223 - 31708291
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||| | | |||||||| || |||||    
T  31708223 tgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaatca 31708291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 42913153 - 42913049
Alignment:
Q  211 ttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaa 310  Q
    ||||||||||||| ||||||| | ||||||  |||||| |||| | |||| ||||||| || ||| | ||| |||||||| ||||||||| || ||||||    
T  42913153 ttttgatacattcttgtaaaaataagttgaaatataaaattgtttgtaaagatcaattctagaataaaaaattataaattataacttcaagtataatcaa 42913054  T
Q  311 ttatg 315  Q
    |||||    
T  42913053 ttatg 42913049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 277
Target Start/End: Complemental strand, 3776662 - 3776555
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    |||||||||||| || ||||||||| ||| | || |||||| || |||||||| ||||||||||||||| | | | ||||||| || ||||||| ||||     
T  3776662 tgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaattaattc 3776563  T
Q  270 tataatca 277  Q
    || |||||    
T  3776562 tagaatca 3776555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 41596110 - 41596201
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    ||||||||| ||| | || ||| ||||| |||||||||||| ||||||||||  | ||||||| |||||| |||||||||||| | ||||||    
T  41596110 tgagttgaatgtaaagtgatttctgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaattctttaatca 41596201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 46853479 - 46853586
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    ||||| |||||| |||| ||||||||||| | || |||||||   |||| ||| ||||||||||||||||| | ||||||||| || | ||||||||||     
T  46853479 tgattttggctacaagtaagttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattc 46853578  T
Q  270 tataatca 277  Q
    || |||||    
T  46853579 tagaatca 46853586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 35253412 - 35253510
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    ||||| |||||| || |||||| |||||| | || ||||| ||| || ||| |||||||||||||||||||   ||||||||| || ||||||||||||    
T  35253412 tgattttggctaaaattgagtttaaggtaaagtgatttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaatt 35253510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 338
Target Start/End: Complemental strand, 52364137 - 52364023
Alignment:
Q  224 atgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattatgaatacatt 323  Q
    ||||||||||||||||| || ||||||| ||| | ||||||||||||| ||||| ||  |||||||  || |||||| || || ||||| |  || |||     
T  52364137 atgtaaaagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattctcgatgcatg 52364038  T
Q  324 attaattctactcga 338  Q
    |||||||||||||||    
T  52364037 attaattctactcga 52364023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 43661944 - 43661883
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaa 266  Q
    |||||||||| ||||||||||||||||||||||||| | ||| |||| ||| | ||||||||    
T  43661944 tttatgtttttatacattcatgtaaaagtgagttgaacaatacatttatgtgtgaaaatcaa 43661883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 25359558 - 25359661
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatc 308  Q
    ||||| ||||||||||| || |||||| || | | |||||| ||||| | ||||||||||||| ||| | ||| || ||||| ||||||||| || ||||    
T  25359558 tgtttggatacattcatatagaagtgattttaacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaacttcaagtagaatc 25359657  T
Q  309 aatt 312  Q
    ||||    
T  25359658 aatt 25359661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 33791980 - 33792058
Alignment:
Q  200 aatgttttatgttttgatacattcatgtaaaagtgag-ttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||| ||| ||||| |||| ||||||||||||||||| || | | |||||||| ||| ||||||||||||||| |||||    
T  33791980 aatgatttgtgtttggatagattcatgtaaaagtgagtttaaacaataaatttatgtgtaaaaatcaattataaaatca 33792058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 300
Target Start/End: Original strand, 47356238 - 47356320
Alignment:
Q  218 acattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaa 300  Q
    ||||||||||||||   | |||| || ||||||| ||| |||||||||||| |||||||| | | ||||||| ||||||||||    
T  47356238 acattcatgtaaaaacaatttgaactttaaatttatgtgtaaaaatcaattctataatcaaagactataaatcttaacttcaa 47356320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 1441352 - 1441417
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtga 235  Q
    |||||||| ||| |||||||||||| ||| | || ||| ||||| |||||||||| ||||||||||    
T  1441352 tgattctgtctaaaagtgagttgaacgtaaagtgatttgtgtttagatacattcacgtaaaagtga 1441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 5407008 - 5406939
Alignment:
Q  206 ttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||| ||||||||||||||||||||| ||||    ||||||  ||| |||||||||||| ||||||||    
T  5407008 ttatgtttggatacattcatgtaaaagtgatttgaagagtaaatt--tgtttaaaaatcaattctataatca 5406939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 29305980 - 29305928
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    |||||||||||||||||| |  | | |||||||||| ||||||||||||||||    
T  29305980 atacattcatgtaaaagtaaaataaactataaatttatgtctaaaaatcaatt 29305928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 31428675 - 31428635
Alignment:
Q  200 aatgttttatgttttgatacattcatgtaaaagtgagttga 240  Q
    |||||| ||||||| ||||||||||| ||||||||||||||    
T  31428675 aatgttctatgtttagatacattcatataaaagtgagttga 31428635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 32523336 - 32523392
Alignment:
Q  221 ttcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||| ||||||||| | || ||||||||||| |||||||||||| || |||||    
T  32523336 ttcatgtataagtgagttaaactctaaatttgtgtgtaaaaatcaattttagaatca 32523392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 171 - 317
Target Start/End: Original strand, 434183 - 434329
Alignment:
Q  171 gattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattat 270  Q
    |||| |||||| |||||||||| ||||| |||| ||| ||||| |||| |||| ||||||||||||||||  | ||||||| ||| |||||||||||| |    
T  434183 gattatggctaaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaaatttaaatttatgtataaaaatcaattct 434282  T
Q  271 ataatcataaagtataaattttaacttcaaataaaatcaattatgaa 317  Q
    | ||||| ||  ||| ||||||||||||||||| |||||||||||||    
T  434283 aaaatcaaaagctattaattttaacttcaaatataatcaattatgaa 434329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 34621025 - 34620919
Alignment:
Q  171 gattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattat 270  Q
    |||||||||||||| ||||||||||||| | || ||||||||| |||||||| |||||||||||||||||   ||||||||  || |||||||||||| |    
T  34621025 gattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattct 34620926  T
Q  271 ataatca 277  Q
    | |||||    
T  34620925 agaatca 34620919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 34748462 - 34748356
Alignment:
Q  171 gattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattat 270  Q
    |||||||||||||| ||||||||||||| | || ||||||||| |||||||| |||||||||||||||||   ||||||||  || |||||||||||| |    
T  34748462 gattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattct 34748363  T
Q  271 ataatca 277  Q
    | |||||    
T  34748362 agaatca 34748356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 882810 - 882728
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    ||||||||||||| |||| ||||||||| |||||||||||| ||||||||||| | | |||||||||  | ||||||||||||    
T  882810 tgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatt 882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 17225950 - 17225885
Alignment:
Q  212 tttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||||||||||||||| |||||||| |||||||||||| | |||||||||||| || |||||    
T  17225950 tttgatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatca 17225885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 957598 - 957710
Alignment:
Q  200 aatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttca 299  Q
    |||| ||||||||| ||||||||||||||||| |||||| |  | ||| ||||||| |||||||| |||||  ||||| ||| ||||||| ||| || ||    
T  957598 aatgatttatgtttggatacattcatgtaaaaatgagttaaattttaagtttgtgtgtaaaaatcgattatggaatcaaaaactataaatcttagctaca 957697  T
Q  300 aataaaatcaatt 312  Q
    | |||||||||||    
T  957698 agtaaaatcaatt 957710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 31305811 - 31305899
Alignment:
Q  189 gttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||||| |||  ||||||||| |||| ||| ||||||||||||||||||| ||||||||| || || ||||||||| || |||||    
T  31305811 gttgaaggtaaaatcatttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaatca 31305899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 3482140 - 3482044
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    |||||||||||||||||| |||||| ||||||| |||||| | |||||||||| || ||||| |   || |||| |||||||||| || ||||||||    
T  3482140 atacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaatcttaacttcaagtataatcaatt 3482044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 4911013 - 4910941
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    ||||||||| |||||||| |||||||||||||| || |||||||||||| | | |||||||||| || |||||    
T  4911013 tttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatca 4910941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 3799040 - 3798974
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgag 236  Q
    ||||||||  || ||||||||||||| || |||| |||||||||| |||||||||||||||| ||||    
T  3799040 tgattctgattaaaagtgagttgaagataaaatgatttatgtttttatacattcatgtaaaaatgag 3798974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 8856428 - 8856362
Alignment:
Q  189 gttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgt 255  Q
    |||||||||| |||| ||| ||||| ||||||||||||| ||||||||||||   ||||||||||||    
T  8856428 gttgaaggtaaaatgatttgtgtttggatacattcatgtgaaagtgagttgaaacataaatttgtgt 8856362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 25195350 - 25195412
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattata 271  Q
    ||||| |||||||| |||||||||||||||||  | ||||||||||| | |||||||||||||    
T  25195350 tgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattata 25195412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 9505904 - 9505803
Alignment:
Q  176 tggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataat 275  Q
    |||||| || ||||||||||| | | || | |||||| | ||| ||||||||||||||| ||||| | ||||||||| || ||||||||||| ||| |||    
T  9505904 tggctaaaattgagttgaaggcaaagtgatatatgttattatatattcatgtaaaagtgtgttgaacaataaatttgagtttaaaaatcaatcatagaat 9505805  T
Q  276 ca 277  Q
    ||    
T  9505804 ca 9505803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 8855046 - 8854931
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaag 282  Q
    |||| ||||||||||| |||  ||| ||||| |||||||| |||||||||| |||| | | |||||||||| | |||||||||||| |||| ||| |||     
T  8855046 aagttagttgaaggtaaaataatttgtgttt-gatacattaatgtaaaagtaagttcaaccataaatttgtatgtaaaaatcaattctatagtcaaaaac 8854948  T
Q  283 tataaattttaacttca 299  Q
    || ||||| || |||||    
T  8854947 tacaaattgtagcttca 8854931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 28466929 - 28466981
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacatt 222  Q
    |||||||||||| || ||||||||||||||| || ||||||||| ||||||||    
T  28466929 tgattctggctaaaattgagttgaaggtatagtggtttatgtttggatacatt 28466981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 34736804 - 34736752
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacatt 222  Q
    |||||||||||| || ||||||||||||||| || ||||||||| ||||||||    
T  34736804 tgattctggctaaaattgagttgaaggtatagtggtttatgtttggatacatt 34736752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 1485091 - 1485198
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    ||||||| |||| ||||||||| || ||  | || |||| |||| |||||| | ||||||||||||||||| | ||||||||| || | ||||||||||     
T  1485091 tgattctagctaaaagtgagtttaaagttgagtgatttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattc 1485190  T
Q  270 tataatca 277  Q
    || |||||    
T  1485191 tagaatca 1485198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 8860605 - 8860546
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    ||||| |||||||||||| ||||||||||||| | |||||||| ||| | ||||||||||    
T  8860605 tgtttagatacattcatgcaaaagtgagttgaaccataaatttatgtgtcaaaatcaatt 8860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 34027362 - 34027469
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    ||||| |||||| |||||||||||| ||   | | |||||| || |||| |||||||||| ||||||||||   ||||||||| || ||||||||||||     
T  34027362 tgattgtggctaaaagtgagttgaaagtgagacggtttatggttagatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaattc 34027461  T
Q  270 tataatca 277  Q
    || |||||    
T  34027462 tagaatca 34027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 6895936 - 6895974
Alignment:
Q  211 ttttgatacattcatgtaaaagtgagttgatctataaat 249  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  6895936 ttttgatacattcatgtaaaagtgaatttatctataaat 6895974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 12126248 - 12126163
Alignment:
Q  224 atgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatca 309  Q
    |||||||||| ||||||||| ||||||| ||| | |||||||||| || ||||| ||  |  |||||| | |||||||||||||||    
T  12126248 atgtaaaagttagttgatctgtaaatttttgtatgaaaatcaattctaaaatcaaaagctgcaaatttcagcttcaaataaaatca 12126163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 12766640 - 12766685
Alignment:
Q  206 ttatgttttgatacattcatgtaaaagtgagttgatctataaattt 251  Q
    ||||||||||||||||||||| ||||||||||| | | ||||||||    
T  12766640 ttatgttttgatacattcatgcaaaagtgagttaaacaataaattt 12766685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 25195126 - 25195186
Alignment:
Q  174 tctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtga 235  Q
    |||| ||| |||||||||||||||| | ||||||||| || |||||||||||||||| ||||    
T  25195126 tctgtctaaaagtgagttgaaggtaaagtgttttatg-ttggatacattcatgtaaatgtga 25195186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 26280731 - 26280647
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    ||||| |||||||||| |||  ||||||||| ||||  || ||||||||||||||| | ||||||||||||   ||||||||||||    
T  26280731 aagtgggttgaaggtaaaataatttatgtttagatatgtt-atgtaaaagtgagtttaactataaatttgtacgtaaaaatcaatt 26280647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 32888918 - 32888983
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaattt 251  Q
    |||||||||| || |||| |||||||||  ||| ||| ||||||||||||||||| | ||||||||    
T  32888918 tgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaacaataaattt 32888983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 994052 - 993956
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    |||||||||| ||||||||| |||| | |||| | | ||| |||||||||||||||| |||| ||  || ||||  ||||||||| |||||| ||||    
T  994052 atacattcatataaaagtgaattgaacaataactatatgtttaaaaatcaattatatgatcaaaagttaaaaatcataacttcaagtaaaattaatt 993956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 3289871 - 3289800
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgt 255  Q
    |||||||||| || || | || ||| ||||| |||||||| |||||||||||||||||  |||||||||||||    
T  3289871 aagtgagttgcagataaagtgatttgtgtttggatacatt-atgtaaaagtgagttgaattataaatttgtgt 3289800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 310
Target Start/End: Original strand, 16972004 - 16972149
Alignment:
Q  165 agaaatgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatc 264  Q
    |||| |||||| | ||| |||||||||||||||| |||| ||| |||||  |||||||||||||||||||| |||| | |||||||||||| ||||||||    
T  16972004 agaattgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatc 16972103  T
Q  265 aattatataatcataaagtataaattttaacttcaaataaaatcaa 310  Q
    |||| || ||| | ||| || ||||| || ||||||||| ||||||    
T  16972104 aattctaaaattaaaaactacaaattctagcttcaaatacaatcaa 16972149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 32928042 - 32927925
Alignment:
Q  160 tatgtagaaatgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaa 259  Q
    |||||| || |||||||  ||| || ||||||||||| | | || ||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||    
T  32928042 tatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaa 32927943  T
Q  260 aaatcaattatataatca 277  Q
    |||| |||| ||||||||    
T  32927942 aaatgaattctataatca 32927925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 13384653 - 13384741
Alignment:
Q  224 atgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    ||||||||||||||||| |||||||||||||| | |||||||||| || ||||| ||  || |||||||| ||||||||| ||||||||    
T  13384653 atgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaatt 13384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 268
Target Start/End: Original strand, 32994175 - 32994285
Alignment:
Q  160 tatgtagaaatgattctggctagaagtgagttgaaggtataatgt--tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtct 257  Q
    |||||| || |||||||||||  |||||||||||||||| ||| |  ||||||||| ||  ||||||||||||||| | |||  |||||||||||||| |    
T  32994175 tatgtaaaattgattctggctgaaagtgagttgaaggtaaaatttgatttatgtttggactcattcatgtaaaagtcatttgcactataaatttgtgtat 32994274  T
Q  258 aaaaatcaatt 268  Q
    |||||||||||    
T  32994275 aaaaatcaatt 32994285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 26100081 - 26100198
Alignment:
Q  160 tatgtagaaatgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaa 259  Q
    |||||| || |||||||| ||| ||  |||||||||||| |    ||| ||||| ||| |||| ||||||||||||||||| | |||||||||||| |||    
T  26100081 tatgtaaaattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaa 26100180  T
Q  260 aaatcaattatataatca 277  Q
    |||||||||||| |||||    
T  26100181 aaatcaattatagaatca 26100198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 10982375 - 10982277
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattat 314  Q
    |||||||||| ||||||||| || | |||||| | | | | | |||||||||| |||||||||||| |||||||| ||||||||| || ||||||||||    
T  10982375 atacattcatataaaagtgaattaaactataagtctatatgtgaaaatcaattttataatcataaattataaattataacttcaagtagaatcaattat 10982277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 32736556 - 32736504
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    |||||||||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  32736556 atacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaatt 32736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 35495365 - 35495293
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    ||||||||| ||||||||||  ||||||||| |||| | ||||||||| || ||||||||||||||| |||||    
T  35495365 tttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatagaatca 35495293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 38335819 - 38335913
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||||||||||  | || ||| ||||  ||||||||||||||||||||||||    ||||||||||||  |||||||||||| || |||||    
T  38335819 aagtgagttgaaggtgaattgatttgtgttcggatacattcatgtaaaagtgagttagaatataaatttgtgcgtaaaaatcaattctaaaatca 38335913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 5859057 - 5859106
Alignment:
Q  219 cattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    |||||||||||||||||||||| | ||||| |||||| ||||||||||||    
T  5859057 cattcatgtaaaagtgagttgaaccataaaattgtgtgtaaaaatcaatt 5859106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 15677810 - 15677903
Alignment:
Q  220 attcatgtaaaagtgagttgatctataaatttgtgtct-aaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    |||||||||| | |||||||| |||||||||||||| | ||||||||||| |||||||| ||  |||||||  || |||||| || ||||||||    
T  15677810 attcatgtaacaatgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaatt 15677903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 32681303 - 32681348
Alignment:
Q  224 atgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||    
T  32681303 atgtaaaagtgagttgaattataaatttgtgtttaaaaatcaatta 32681348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 38868593 - 38868496
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    ||||||||  ||||||| |||||||| |||||||||||||| | ||||||||||||| || || ||  || |||| ||| |||||| || ||||||||    
T  38868593 gatacattattgtaaaattgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaatt 38868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 13929678 - 13929734
Alignment:
Q  206 ttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaa 262  Q
    ||||||||||||||||||||||||||||| |||||   ||||||||| | |||||||    
T  13929678 ttatgttttgatacattcatgtaaaagtgggttgaaaaataaatttgaggctaaaaa 13929734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 35495091 - 35495023
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    ||||| |||| |||||||||||||| |||||| ||||| |||||||| |||||| ||||| || |||||    
T  35495091 tgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatca 35495023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 2924881 - 2924822
Alignment:
Q  206 ttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatca 265  Q
    |||||||| |||||||  ||||||||||||||||||| ||| ||||| || |||||||||    
T  2924881 ttatgtttggatacatatatgtaaaagtgagttgatcaatatatttgagtgtaaaaatca 2924822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 4662887 - 4662946
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    ||||| |||||||||| | ||||| ||||||| ||||| |||||||| ||||||||||||    
T  4662887 tgtttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaatt 4662946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 38868837 - 38868782
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattata 271  Q
    |||| ||||||||||||||||| || |||||||||||||  | |||||||||||||    
T  38868837 atacgttcatgtaaaagtgagtagaactataaatttgtgcgtgaaaatcaattata 38868782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 32101168 - 32101130
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgt 253  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  32101168 gatacatttatgtaaaagtgagttgaactataaatttgt 32101130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 4554630 - 4554565
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaattt 251  Q
    |||||||||||||  ||| ||| ||||||||||||||| |||||||| | ||||| | ||||||||    
T  4554630 tgagttgaaggtaagatgatttgtgttttgatacattcctgtaaaagcgggttgaacaataaattt 4554565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 7601896 - 7601996
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    ||||| || ||| |||||| ||||| ||| |||| |||||  ||  ||| ||||||| |||| |||||||| ||| |||||||||| |||||||||||||    
T  7601896 tgattttgactaaaagtgaattgaatgtaaaatgatttatagttgcatatattcatgaaaaaatgagttgaacta-aaatttgtgtttaaaaatcaatta 7601994  T
Q  270 ta 271  Q
    ||    
T  7601995 ta 7601996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 10368092 - 10368044
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaa 231  Q
    |||||||||||||||| | || ||| ||||| |||||||||||||||||    
T  10368092 aagtgagttgaaggtaaagtgatttgtgtttagatacattcatgtaaaa 10368044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 37684506 - 37684438
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    ||||| |||||||| |||||||||||||||||  ||||||||| ||  | |||||||||| || |||||    
T  37684506 tgtttggatacatttatgtaaaagtgagttgaattataaatttttgcattaaaatcaattttagaatca 37684438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 40769358 - 40769454
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    |||||||  ||||||| ||| ||||  ||||||||||||| | ||||||||||||| ||| | ||| ||| |||||| ||| ||| || ||||||||    
T  40769358 atacatttgtgtaaaattgaattgaattataaatttgtgtgtgaaaatcaattatagaataaaaaaatattaattttgactccaagtagaatcaatt 40769454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 43492212 - 43492252
Alignment:
Q  200 aatgttttatgttttgatacattcatgtaaaagtgagttga 240  Q
    |||| ||||||||| ||||||||||||||||||| ||||||    
T  43492212 aatgatttatgtttggatacattcatgtaaaagtaagttga 43492252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 45557505 - 45557408
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaat 267  Q
    |||||||| ||| |||||||||||||||| | || ||| ||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||||||    
T  45557505 tgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaat 45557408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 277
Target Start/End: Complemental strand, 40491718 - 40491611
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    ||||| || ||| |||||||||||||||| | || ||||| ||| |||||||||||||||||||||||| | || ||||||||||| ||||| ||||||     
T  40491718 tgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaattc 40491619  T
Q  270 tataatca 277  Q
    || |||||    
T  40491618 tagaatca 40491611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 25156338 - 25156242
Alignment:
Q  172 attctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    |||||| ||| || |||||||||| || |||| ||| |||||  |||||||||| ||||||||||||||| ||| ||||| ||| ||||||||||||    
T  25156338 attctgactaaaaatgagttgaagataaaatgatttgtgtttgaatacattcatataaaagtgagttgatttattaatttatgtgtaaaaatcaatt 25156242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 12306863 - 12306793
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttga 240  Q
    |||||||||||| ||||||||||||| || | || ||||||||| | || |||||||||||||||||||||    
T  12306863 tgattctggctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttga 12306793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 1442721 - 1442606
Alignment:
Q  160 tatgtagaaatgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaa 259  Q
    |||||| || |||||||| ||| |||||||||| ||||| | || ||||||| | ||||||||||||||||  ||| |||  || ||||||||||| | |    
T  1442721 tatgtaaaattgattctgactaaaagtgagttgcaggtaaagtggtttatgtatggatacattcatgtaaacatgatttg--ctgtaaatttgtgtttta 1442624  T
Q  260 aaatcaattatataatca 277  Q
     ||||||||||| |||||    
T  1442623 gaatcaattatagaatca 1442606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 336
Target Start/End: Original strand, 32938687 - 32938797
Alignment:
Q  226 gtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattatgaatacattat 325  Q
    |||||| |||||||| | ||||||||  |||||||| | ||||||| ||| | ||| || ||||| |||||| |||||||||||||||  ||||||  ||    
T  32938687 gtaaaactgagttgaacaataaatttaagtctaaaagtaaattataaaattaaaaactacaaattctaactttaaataaaatcaattaaaaatacaaaat 32938786  T
Q  326 taattctactc 336  Q
    |||||| ||||    
T  32938787 taattccactc 32938797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 33853429 - 33853491
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaag 232  Q
    ||||||||||||  |||||||||||| || | || ||||||||| ||||||||||||||||||    
T  33853429 tgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgtaaaag 33853491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 38123659 - 38123709
Alignment:
Q  218 acattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    ||||||||||||||||||||||| | ||||||||| || ||||||||||||    
T  38123659 acattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaatt 38123709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 40561719 - 40561773
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttga 240  Q
    ||||||||| ||| | || ||||||||| ||||||||||||||||||||||||||    
T  40561719 tgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttga 40561773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 310
Target Start/End: Original strand, 9183876 - 9184000
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtat 285  Q
    ||||||||||||| |||  |||||||||  |||||||| |||||  |||| |||| | |||||||||  | ||||| |||||| ||  || | ||| ||     
T  9183876 tgagttgaaggtaaaattatttatgtttatatacattcgtgtaagtgtgacttgaacaataaatttgaatataaaactcaattctagtattaaaaactac 9183975  T
Q  286 aaattttaacttcaaataaaatcaa 310  Q
    || ||||||||||||||||||||||    
T  9183976 aatttttaacttcaaataaaatcaa 9184000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 32295285 - 32295239
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgt 255  Q
    |||||| ||||||| |||||||||||||||||  |||||||||||||    
T  32295285 tgttttaatacatttatgtaaaagtgagttgaattataaatttgtgt 32295239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 45005146 - 45005053
Alignment:
Q  184 agtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    ||||||||||||||| |  | || ||||||||||| ||| |||||||||||||||||   ||||||||| ||   || ||||||| ||||||||    
T  45005146 agtgagttgaaggtaaaccgattgatgttttgatatatttatgtaaaagtgagttgaataataaatttgagtgctaagatcaattctataatca 45005053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 42816459 - 42816511
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    ||||||||||||| |||||| ||||  ||||||||||||| | ||||||||||    
T  42816459 atacattcatgtagaagtgaattgaattataaatttgtgtgtgaaaatcaatt 42816511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 14059 - 14169
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    ||||||| |||| || ||||||||||||| | || ||||||||| ||||||||||||| ||||||||||||   ||||||||| || ||||||||||||     
T  14059 tgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattc 14158  T
Q  270 tataatcataa 280  Q
    || ||||||||    
T  14159 tagaatcataa 14169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 25927433 - 25927303
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaag 282  Q
    |||||||||||| ||| |||||||||| ||| |||||||||| |||||||||| |||| | |||||||| ||  |||||||||||| |  ||||||||      
T  25927433 aagtgagttgaaagtaaaatgttttatatttcgatacattcacgtaaaagtgaattgagccataaatttatg--taaaaatcaattctgaaatcataagc 25927336  T
Q  283 tataaattttaacttcaaataaaatcaattatg 315  Q
    || |||| |||||| |||||| |||||||||||    
T  25927335 tacaaatcttaactccaaatagaatcaattatg 25927303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 32818354 - 32818457
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatc 308  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||||||  ||||||||||| || ||||| ||  || ||||| || ||||||||| ||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatc 32818453  T
Q  309 aatt 312  Q
    ||||    
T  32818454 aatt 32818457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 312
Target Start/End: Complemental strand, 47144338 - 47144213
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtat 285  Q
    |||||||||| |||| || ||||||||| ||||||||||| ||||||| |||||  | ||||||||  |  ||||||||||||||| ||||||||| ||     
T  47144338 tgagttgaagatatattgatttatgtttggatacattcatctaaaagttagttggacaataaattttagcgtaaaaatcaattatagaatcataaacta- 47144240  T
Q  286 aaattttaacttcaaataaaatcaatt 312  Q
    || ||||||||||||||  ||||||||    
T  47144239 aatttttaacttcaaattgaatcaatt 47144213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 35065164 - 35065059
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagt-ataaattttaacttcaaataaaat 307  Q
    ||||| ||||||||||||||||||||||| ||  ||||||||||||| |||||||||||| || ||||| ||||| | ||||  || |||||| ||||||    
T  35065164 tgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatca-aaagtcacaaatactagcttcaagtaaaat 35065066  T
Q  308 caattat 314  Q
    |||||||    
T  35065065 caattat 35065059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 8604602 - 8604710
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataa 304  Q
    ||||||||| ||||||||||||||||||||  || | |||||||||||||| | |||||||||| || ||||  ||  || |||| ||| |||||| ||     
T  8604602 tttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtag 8604701  T
Q  305 aatcaatta 313  Q
    |||||||||    
T  8604702 aatcaatta 8604710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 16552050 - 16552010
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgtgt 255  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  16552050 gatacattcatgtaaaagtgagttgaactataaatttgtgt 16552010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 33843851 - 33843771
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatt 250  Q
    |||||||||||| |||||||||| | ||| | || ||||||||| |||| |||||||||| |||||||||| | |||||||    
T  33843851 tgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaataaatt 33843771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 21691196 - 21691255
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    ||||| |||| ||||||||||||||| ||||| |||||||||||||| | ||||||||||    
T  21691196 tgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaatt 21691255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 347
Target Start/End: Original strand, 53913568 - 53913699
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattatg 315  Q
    ||||||| |||| | |||||||| | |||||||||| ||| | ||||||||||||| ||||| |||  ||||||  || ||| || |||||||||||||     
T  53913568 atacatttatgttatagtgagtttaactataaatttatgtgtgaaaatcaattatagaatcacaaatgataaatcatatctttaagtaaaatcaattata 53913667  T
Q  316 aatacattattaattctactcgaaaacaaaca 347  Q
    ||  ||  || |||||||||||| ||||||||    
T  53913668 aaggcaaaatcaattctactcgacaacaaaca 53913699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 10185307 - 10185227
Alignment:
Q  198 ataatgttttatgttttg-atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||| ||||||||||| ||||||| ||||||||||||||| | | ||||||||| || |||| ||||||| || |||||    
T  10185307 ataatgatttatgttttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatca 10185227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 22683991 - 22683923
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaattt 251  Q
    |||||||||||| ||| |||| ||||||||| || ||||| ||||||||| ||||||| | ||||||||    
T  22683991 aagtgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaagcgagttgaacaataaattt 22683923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 39386723 - 39386631
Alignment:
Q  220 attcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    ||||||||||||||||||||| || ||||| ||||| | ||||||||||||| ||| | |   ||||||||||| ||| || || ||||||||    
T  39386723 attcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaattaaatgttataaattttagctttaagtagaatcaatt 39386631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 30357580 - 30357545
Alignment:
Q  242 ctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||||||||| |||||||||||||||||||||    
T  30357580 ctataaatttgtgtgtaaaaatcaattatataatca 30357545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 55927750 - 55927797
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttg 252  Q
    ||||||||| ||||||||||||||||||||| |||| | |||||||||    
T  55927750 tttatgtttggatacattcatgtaaaagtgacttgaacaataaatttg 55927797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 1023855 - 1023933
Alignment:
Q  162 tgtagaaatgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttga 240  Q
    |||| |||||||| | |||| |||||||||||||||| | || ||| ||||| |||| ||| |||| ||||||||||||    
T  1023855 tgtaaaaatgattttagctaaaagtgagttgaaggtaaagtgatttttgtttggatatattgatgtgaaagtgagttga 1023933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 20718712 - 20718615
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    |||||||| || ||||||| | |||| |||||| |||||||  ||||||||||| |||||| | ||  || ||||  ||| |||||||||||||||||    
T  20718712 gatacatttatttaaaagtaacttgaactataattttgtgtagaaaaatcaattttataattaaaagctacaaatcataaattcaaataaaatcaatt 20718615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 25319175 - 25319107
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaattt 251  Q
    |||| ||||||| ||| | | |||||||||| |||||||| | ||||||||||||||| | ||||||||    
T  25319175 aagtaagttgaatgtaaagttttttatgtttcgatacatttacgtaaaagtgagttgaacaataaattt 25319107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 35961501 - 35961417
Alignment:
Q  177 ggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaa 261  Q
    ||||| |||||||||||||||| |||| |||||||||  |||||||||||||||||||||||||  | ||||||||||| |||||    
T  35961501 ggctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaattttaaatttgtgtataaaa 35961417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 277
Target Start/End: Complemental strand, 7524253 - 7524146
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    |||||||  ||| ||||||| | |||||| | || ||| ||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||||     
T  7524253 tgattctaactaaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattc 7524154  T
Q  270 tataatca 277  Q
    ||||||||    
T  7524153 tataatca 7524146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 344
Target Start/End: Original strand, 28083872 - 28084007
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatc 308  Q
    ||||| |||| ||||||||||||||||| ||| ||  |||||||||| ||||||| ||||||| ||||| ||  || ||||| || |||||| || ||||    
T  28083872 tgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaatc 28083971  T
Q  309 aattatgaatacattattaattctactcgaaaacaa 344  Q
    ||||| ||| |||  || ||||||||||||||||||    
T  28083972 aattacgaagacaaaatcaattctactcgaaaacaa 28084007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 1514444 - 1514378
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataat 275  Q
    ||||| ||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||    
T  1514444 tgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataat 1514378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 48548975 - 48549064
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    ||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| | |||||  || || |||||||||||| || |||||    
T  48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaacaataaa--tgagtttaaaaatcaattctagaatca 48549064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 314
Target Start/End: Complemental strand, 3016265 - 3016158
Alignment:
Q  207 tatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaa 306  Q
    ||||||| |||||||||||||||||||||||||| |  ||||||| ||| |||| ||||||| || ||||| ||  || ||||| ||| ||||| || ||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaagttcaagtagaa 3016166  T
Q  307 tcaattat 314  Q
    ||||||||    
T  3016165 tcaattat 3016158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 11049345 - 11049283
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||||| |||||||||| |||| |||||||||||||| |||||||||||| || |||||    
T  11049345 gatacattcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatca 11049283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 34915193 - 34915099
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||||| ||||| |||| |||||||||  |||||||||||||||||||||||||  |||||| | |||| | | |||||||| || |||||    
T  34915193 aagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatca 34915099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 310
Target Start/End: Original strand, 52339689 - 52339813
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtat 285  Q
    ||||||||||||| |||  ||||| |||  |||||||| |||||| |||| |||| | ||||||||| || ||||| |||||| ||  || | ||  |||    
T  52339689 tgagttgaaggtaaaattatttatatttatatacattcgtgtaaatgtgacttgaacaataaatttgagtataaaactcaattctagtattagaagctat 52339788  T
Q  286 aaattttaacttcaaataaaatcaa 310  Q
    || ||||||||||||||||||||||    
T  52339789 aatttttaacttcaaataaaatcaa 52339813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 1233429 - 1233350
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatca 265  Q
    |||||| |||||| |||  ||||||||| ||||||||||||| |||||||||| | | ||||||||| || |||||||||    
T  1233429 tgagtttaaggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaatttgagtgtaaaaatca 1233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 30557603 - 30557557
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgt 255  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  30557603 tgtttggatacattcatataaaagtgagttgaactataaatttgtgt 30557557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 3416175 - 3416078
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaatt 312  Q
    ||||||| ||| ||||| |||||| | |||||||||||||| |||||||||||| || ||| | ||| || |||| ||||||| || || ||||||||    
T  3416175 gatacatccatataaaattgagttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaactacaaatcttaactttaagtataatcaatt 3416078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 7790644 - 7790693
Alignment:
Q  227 taaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatc 276  Q
    |||||||||||||| | |||||||||||| ||||||||||||||| ||||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatc 7790693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 30850393 - 30850442
Alignment:
Q  219 cattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    |||||||||||||||||||||| |||||||||||| | | ||||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaatt 30850442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 47321902 - 47321950
Alignment:
Q  220 attcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    |||||||||||||||| |||| |||||||||||||| | ||||||||||    
T  47321902 attcatgtaaaagtgaattgaactataaatttgtgtatgaaaatcaatt 47321950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 213522 - 213589
Alignment:
Q  210 gttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||| ||| |||||||||||||||||||||| | | ||||||| || |||||||||||| || |||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaatca 213589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 11817262 - 11817368
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    |||||||  ||| ||| ||||||||| || |||| ||| | |||  ||||||| |||||||||| |||||| ||||||||||||||  |||||||||||     
T  11817262 tgattctaactaaaagcgagttgaagataaaatgatttttatttgaatacattaatgtaaaagttagttgaactataaatttgtgt-aaaaaatcaattt 11817360  T
Q  270 tataatca 277  Q
    || |||||    
T  11817361 taaaatca 11817368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 14334056 - 14334111
Alignment:
Q  218 acattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatata 273  Q
    ||||||| |||| |||||||| | |||||||||||||| | |||||||||||||||    
T  14334056 acattcacgtaagagtgagtttaactataaatttgtgtatgaaaatcaattatata 14334111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 34721831 - 34721886
Alignment:
Q  216 atacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattata 271  Q
    ||||||| |||||||||| ||| || |||||||||||||| | |||||||||||||    
T  34721831 atacattgatgtaaaagtaagtcgaactataaatttgtgtgtgaaaatcaattata 34721886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 38797610 - 38797672
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    |||||||||  ||||||| || |||||||||||||| |||||||||||||| | ||||||||||    
T  38797610 tttatgtttgcatacatt-atttaaaagtgagttgaactataaatttgtgtgtgaaaatcaatt 38797672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 5268359 - 5268289
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttga 240  Q
    |||||||| ||| |||||||||||| ||| | || ||| |||||  ||| |||||||||||||||||||||    
T  5268359 tgattctgcctaaaagtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgagttga 5268289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 6590008 - 6590070
Alignment:
Q  257 taaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattatgaata 319  Q
    ||||||||||||||||||| | ||| || ||||| |||||| ||||| |||||||| ||||||    
T  6590008 taaaaatcaattatataataaaaaactacaaattctaactttaaatataatcaattctgaata 6590070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 10324928 - 10324990
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||| ||||||||||||||  | | ||||||||| || ||||||||||||||| |||||    
T  10324928 gatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatca 10324990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 27849267 - 27849181
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatc-tataaatttgtgtctaaaaatcaatt 268  Q
    |||||||||||||||| |||| ||| ||||  ||||||||||||||||||  |||||| | | ||| ||||| | ||||||||||||    
T  27849267 aagtgagttgaaggtaaaatgatttgtgttaggatacattcatgtaaaagaaagttgaacttttaagtttgtttgtaaaaatcaatt 27849181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 52263627 - 52263689
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaat 267  Q
    ||||||||| |||||||| |||||||| |||||| | | ||||||||| || |||||||||||    
T  52263627 tttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 52263689  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 16518905 - 16518834
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtg 254  Q
    ||||||||||| |||| |||| ||| ||||| |||||||||||||||||||||||||| |||||||||||||    
T  16518905 aagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtg 16518834  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 1976809 - 1976901
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaa 262  Q
    ||||||||||||||| ||||||||||||| |  |  |||||||| |||||||||||||||||||||||| | | ||||||||| || ||||||    
T  1976809 tgattctggctagaattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagtgtaaaaa 1976901  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 4894102 - 4894209
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatta 269  Q
    ||||||| |||| || | ||||||||||| | || ||||||||| ||||||||||| ||||||||| ||||   ||||||||| || ||| |||||||||    
T  4894102 tgattctagctaaaattaagttgaaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatttgagtataataatcaatta 4894201  T
Q  270 tataatca 277  Q
    || |||||    
T  4894202 tagaatca 4894209  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 33019140 - 33019243
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatc 308  Q
    ||||| ||| |||||||||||||||||||||| |||||||||| ||| | |||||||||| || || || ||  || ||||| || ||||||||| ||||    
T  33019140 tgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatataatc 33019239  T
Q  309 aatt 312  Q
    ||||    
T  33019240 aatt 33019243  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 8800678 - 8800744
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattata 271  Q
    ||||||||| ||||| ||||||||||||||||||||  ||||||||||| | | |||||||||||||    
T  8800678 tttatgtttggatacgttcatgtaaaagtgagttgaattataaatttgtatattaaaatcaattata 8800744  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 11504046 - 11504113
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||| ||||||||||||||||||||||||| |||||| ||||||| | |||| ||||| ||||||||    
T  11504046 tgttttaatacattcatgtaaaagtgagttgaactataactttgtgtgtgaaaa-caattctataatca 11504113  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 15220819 - 15220886
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatt 250  Q
    |||||||||||| ||| | || ||||||||| ||||||||||||| |||||||||||| | |||||||    
T  15220819 aagtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 16519584 - 16519489
Alignment:
Q  170 tgattctggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatca 265  Q
    ||||||||||||||||||| ||||| ||| | || ||||| || ||||||||||||| |||| || ||||| | ||||||||| | ||||| ||||    
T  16519584 tgattctggctagaagtgaattgaaagtaaagtgatttatattctgatacattcatgcaaaattgggttgaacaataaatttgaggctaaagatca 16519489  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 680251 - 680305
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttga 240  Q
    ||||||||||||| | |||||| |||||  |||||||||||||||||||||||||    
T  680251 tgagttgaaggtaaagtgttttgtgtttgcatacattcatgtaaaagtgagttga 680305  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 42982639 - 42982586
Alignment:
Q  215 gatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaatt 268  Q
    |||||||||||||||||||||||||    |||||||||||| ||||||||||||    
T  42982639 gatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaatt 42982586  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 44439388 - 44439287
Alignment:
Q  176 tggctagaagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataat 275  Q
    |||||| ||||||||| || ||| | || ||||||||| ||||  || ||||||||||||||||| | ||||||||| || | |||||||||| || |||    
T  44439388 tggctataagtgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaat 44439289  T
Q  276 ca 277  Q
    ||    
T  44439288 ca 44439287  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 33502322 - 33502270
Alignment:
Q  225 tgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||||||||||| |||||||| ||||| |||||||||||| || |||||    
T  33502322 tgtaaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatca 33502270  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 10644708 - 10644613
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaa 300  Q
    |||| |||| |||||||| || |||||||||||||| |||||||||| ||| | ||| | |||| |||||| | ||| || |||| ||||||||||    
T  10644708 tttaagtttggatacatttatataaaagtgagttgaactataaatttatgtatgaaagttaattctataatgaaaaactacaaatcttaacttcaa 10644613  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 33961978 - 33962033
Alignment:
Q  222 tcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||||| ||| |||| | ||||||||| |||||||||||||||||| |||||    
T  33961978 tcatgtaaaaatgacttgaacaataaatttgagtctaaaaatcaattatagaatca 33962033  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 45066509 - 45066438
Alignment:
Q  243 tataaatttgtgtctaaaaatcaattatataatcataaagtataaattttaacttcaaataaaatcaattat 314  Q
    ||||||||||||| | ||||| |||| || ||| | ||| || ||||||||||||||| |||||||||||||    
T  45066509 tataaatttgtgtgtgaaaataaattttaaaataaaaaactaaaaattttaacttcaactaaaatcaattat 45066438  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 11759817 - 11759911
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||||||||||| | || ||| |||||  ||||| | ||||||  |||| |||| |||||||||||| | |||||||||||| || |||||    
T  11759817 aagtgagttgaaggtaaattggtttgtgtttgtatacacttatgtaagcgtgatttgaactataaatttgtatgtaaaaatcaattctagaatca 11759911  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 40401604 - 40401658
Alignment:
Q  186 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttga 240  Q
    ||||||||||||| | |  ||||||||| ||||||||||||||||||| ||||||    
T  40401604 tgagttgaaggtagactaatttatgtttggatacattcatgtaaaagtcagttga 40401658  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 3352181 - 3352109
Alignment:
Q  205 tttatgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    |||||||||||| |  || |||||||||| ||||||   |||||||||||| | ||||||||||||| |||||    
T  3352181 tttatgttttgacaattttatgtaaaagtaagttgaaacataaatttgtgtgtgaaaatcaattatagaatca 3352109  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 3853980 - 3853932
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaa 231  Q
    |||||||||||| ||| | || ||||||||| |||||||||||||||||    
T  3853980 aagtgagttgaatgtaaattgatttatgtttggatacattcatgtaaaa 3853932  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 32596092 - 32596024
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaatcaattatataatca 277  Q
    ||||| |||| ||| |||||||||||||||||  ||| ||||||| | |||||||||||| || |||||    
T  32596092 tgtttggatatatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaattttagaatca 32596024  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 44412203 - 44412151
Alignment:
Q  183 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtga 235  Q
    |||||||||||| ||| |||| |||||| || ||| |||||||||||||||||    
T  44412203 aagtgagttgaacgtaaaatgatttatgcttagatccattcatgtaaaagtga 44412151  T

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Target: scaffold0360 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 13174 - 13227
Alignment:
Q  209 tgttttgatacattcatgtaaaagtgagttgatctataaatttgtgtctaaaaa 262  Q
    |||||| ||||||| || |||||||||||||| | ||||| |||||||||||||    
T  13174 tgttttaatacatttatttaaaagtgagttgaaccataaaattgtgtctaaaaa 13227  T

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