View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5461_low_15 (Length: 405)
Name: NF5461_low_15
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 155 - 404
Target Start/End: Original strand, 45593540 - 45593798
Alignment:
| Q |
155 |
catgcatttttcaaaaatgaagatatcacaaaaaggttgagaaaac-----taactatt----ctaccatatatcagagtatttgcctttctctattgaa |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45593540 |
catgcatttttcaaaaatgaagatatcacaaaaaggttgagaaaactaaactaactattctacctaccatatatcagagtatttgcctttctctattgaa |
45593639 |
T |
|
| Q |
246 |
gagactaactaacatagtggatgtttggtatcacggtttgtcaaagcattggtatcaggatggctcaccgtgataccaaacacgcacttagtcacatcta |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45593640 |
gagactaactaacatagtggatgtttggtatcacggtttgtcaaagcattggtatcaggatggctcattgtgataccaaacacgcacttagtcacatcta |
45593739 |
T |
|
| Q |
346 |
ccatcaaggagattcaagaaattgtcggtatgtcccaggaaacctatttcatcgggcat |
404 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
45593740 |
ccatcaaggagattcaagaaattgtcagtatgtcccaggaaacctatttcatcaggcat |
45593798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 45593435 - 45593539
Alignment:
| Q |
17 |
ttacacataatcaacagttgttgaagaacgtgaacaaaatcactagttgttaatccattgatctaaccattctctgtccacccttttccccctctaaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45593435 |
ttacacataatcaacagttgttgaaggacgtgaacaaaatcactagttgttaatccattgatctaaccattctctgtccacccttttccccctctaaaca |
45593534 |
T |
|
| Q |
117 |
tggac |
121 |
Q |
| |
|
||||| |
|
|
| T |
45593535 |
tggac |
45593539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University