View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5461_low_16 (Length: 389)

Name: NF5461_low_16
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5461_low_16
NF5461_low_16
[»] chr2 (1 HSPs)
chr2 (1-369)||(18071130-18071501)
[»] scaffold0001 (1 HSPs)
scaffold0001 (23-160)||(414651-414788)
[»] chr8 (2 HSPs)
chr8 (20-160)||(16601773-16601913)
chr8 (97-167)||(1296243-1296313)
[»] chr5 (2 HSPs)
chr5 (20-176)||(38628689-38628845)
chr5 (69-191)||(11214398-11214520)
[»] chr1 (1 HSPs)
chr1 (8-217)||(20101087-20101310)
[»] chr3 (4 HSPs)
chr3 (63-173)||(14893769-14893879)
chr3 (63-142)||(43366292-43366371)
chr3 (117-175)||(49716052-49716110)
chr3 (20-59)||(43365763-43365802)
[»] scaffold0756 (1 HSPs)
scaffold0756 (7-175)||(989-1149)
[»] chr7 (1 HSPs)
chr7 (137-235)||(5062698-5062796)
[»] chr4 (2 HSPs)
chr4 (89-192)||(52701859-52701962)
chr4 (20-59)||(52701801-52701840)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 18071501 - 18071130
Alignment:
Q  1 aaacaaagaggggtaattaaggag---aaagtttttattgaaaaactaaatgaactagttgtgtgagtggcatctgaggcgtatcggcagtgtatcgccg 97  Q
    ||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  18071501 aaacaaagaggggtaattaaggaggagaaagtttttattggaaaactaaatgaactagttgtgtgagtggcatctgaggcgtatcggcagcgtatcgctg 18071402  T
Q  98 cgtgtcgatgacatatcagaattattttattttttaaagataaataaataaattggatactccatcgataggtatcgacagaatatcaagacgtatcaga 197  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||    
T  18071401 cgtgtcgacgacgtatcagaattattttatttttcaaagataaataaataaattggatactccatcgatacgtatcgacggagtatcaggacgtatcaga 18071302  T
Q  198 tacaatacggtagctattttaatgtatccgtgtttcatggttttctatgttcaactctggtcatgttgattctcaacctttggtcatgagagtatgtgtg 297  Q
    ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18071301 tacgatacggtagctattttgatgtatccgtgcttcatggttttctatgttcaactttggtcatgttgattctcaacctttggtcatgagagtatgtgtg 18071202  T
Q  298 tttgaaagtagatggataattagatagtggaaatcagagacatgaccccttgtgttttttaaacatgacagg 369  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18071201 tttgaaagtagatggataattagatagtgggaatcagagacatgaccccttgtgttttttaaacatgacagg 18071130  T

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Target: scaffold0001 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 414651 - 414788
Alignment:
Q  23 agaaagtttttattgaaaaactaaatgaactagttgtgtgagtggcatctgaggcgtatcggcagtgtatcgccgcgtgtcgatgacatatcagaattat 122  Q
    ||||||||||||||||||||||||||||||||| | | | ||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| |||||||    
T  414651 agaaagtttttattgaaaaactaaatgaactagctatataagtggcatccgaggcgtatcggcagcgtatcgccgcgtgtcgacgacgtatcggaattat 414750  T
Q  123 tttattttttaaagataaataaataaattggatactcc 160  Q
    ||||||||||||| |||| ||||||||| |||||||||    
T  414751 tttattttttaaaaataattaaataaatcggatactcc 414788  T

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Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 16601913 - 16601773
Alignment:
Q  20 aggagaaagtttttattgaaaaactaaatgaactagttgtgtgagtggcatctgaggcgtatcggcagtgtatcgccgcgtgtcgatgacatatcagaat 119  Q
    |||||||||||||||||| |||| |||||||||||||||| | |||| ||||||| | ||||||| || ||||||||||||||||| ||| |||||||||    
T  16601913 aggagaaagtttttattggaaaattaaatgaactagttgtatcagtgacatctgacgtgtatcggtagcgtatcgccgcgtgtcgacgacgtatcagaat 16601814  T
Q  120 tattttattttttaaagataaataaataaattggatactcc 160  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  16601813 tattttattttttaaaaataaataaataaatcggatactcc 16601773  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 1296243 - 1296313
Alignment:
Q  97 gcgtgtcgatgacatatcagaattattttattttttaaagataaataaataaattggatactccatcgata 167  Q
    ||||||||| ||  |||| |||||||||||| |||| || |||||||||||||||| ||||| | ||||||    
T  1296243 gcgtgtcgacgaagtatcggaattattttatatttttaaaataaataaataaattgaatacttcgtcgata 1296313  T

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Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 38628689 - 38628845
Alignment:
Q  20 aggagaaagtttttattgaaaaactaaatgaactagttgtgtgagtggcatctgaggcgtatcggcagtgtatcgccgcgtgtcgatgacatatcagaat 119  Q
    |||||||| ||||||||| ||||||||||||||||||||| | ||||| |||  |||||||||||||| |||||| |||||||||| ||| |||| ||||    
T  38628689 aggagaaattttttattggaaaactaaatgaactagttgtatcagtggtatccaaggcgtatcggcagcgtatcgtcgcgtgtcgacgacgtatcggaat 38628788  T
Q  120 tattttattttttaaagataaataaataaattggatactccatcgataggtatcgac 176  Q
    |||||||||||||||| ||||||||||||||  |||| ||| ||||||  |||||||    
T  38628789 tattttattttttaaaaataaataaataaatcagatattccgtcgatacatatcgac 38628845  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 191
Target Start/End: Original strand, 11214398 - 11214520
Alignment:
Q  69 atctgaggcgtatcggcagtgtatcgccgcgtgtcgatgacatatcagaattattttattttttaaagataaataaataaattggatactccatcgatag 168  Q
    ||||||||||| ||||||| ||||  ||||||||||| ||  |||| |||||||||||| |||| || |||||||||||||| ||||||||| ||||||     
T  11214398 atctgaggcgtgtcggcagcgtatgaccgcgtgtcgacgaagtatcggaattattttatatttttaaaataaataaataaatcggatactccgtcgatat 11214497  T
Q  169 gtatcgacagaatatcaagacgt 191  Q
    | || | | || |||||||||||    
T  11214498 gcatagccggagtatcaagacgt 11214520  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 20101310 - 20101087
Alignment:
Q  8 gaggggtaattaaggag---aaagtttttattgaaaaactaaatgaactagttgtgtga---------gtggcatctgaggcgtatcggcagtgtatcgc 95  Q
    |||||||||||||||||   ||| ||||||||| |||||||||||||||| |||| ||          |||||||||||||||||||||||| |||||||    
T  20101310 gaggggtaattaaggaggagaaattttttattggaaaactaaatgaactacttgtatgtattagtggcgtggcatctgaggcgtatcggcagcgtatcgc 20101211  T
Q  96 cgcgtgtcgatgacatatcagaattattttatt-ttttaaagataaataaataaattggatactccatcgataggtatcgacagaatatc-aagacgtat 193  Q
    |||||||||| ||  |||| ||||||||||||| |||| || |||||||||||||| ||||||| | |||| | |||||||  || ||||   |||||||    
T  20101210 cgcgtgtcgacgaagtatcggaattattttattttttttaaaataaataaataaatcggatacttcgtcgaaacgtatcgatggagtatcggggacgtat 20101111  T
Q  194 cagatacaatacggtagctatttt 217  Q
    | ||||| ||||||||||||||||    
T  20101110 cggatacgatacggtagctatttt 20101087  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 14893769 - 14893879
Alignment:
Q  63 agtggcatctgaggcgtatcggcagtgtatcgccgcgtgtcgatgacatatcagaattattttattttttaaagataaataaataaattggatactccat 162  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||  |||| |||||||| ||||||||||| ||||||||||||||  ||||||| ||    
T  14893769 agtggcattcgaggcgtatcggcagtgtatcgccgcgtgtcgatgatgtatcggaattattctattttttaaaaataaataaataaatcagatactctat 14893868  T
Q  163 cgataggtatc 173  Q
    | ||| |||||    
T  14893869 ctatacgtatc 14893879  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 43366292 - 43366371
Alignment:
Q  63 agtggcatctgaggcgtatcggcagtgtatcgccgcgtgtcgatgacatatcagaattattttattttttaaagataaat 142  Q
    ||||||||| ||||||||||| |  ||||||||||||| ||||  || |||||||||||||||||||||| || ||||||    
T  43366292 agtggcatccgaggcgtatcgacgatgtatcgccgcgtatcgacaacgtatcagaattattttattttttgaaaataaat 43366371  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 49716110 - 49716052
Alignment:
Q  117 aattattttattttttaaagataaataaataaattggatactccatcgataggtatcga 175  Q
    ||||||||||||||||||| |||||||||||||| ||||||||  |||||| |||||||    
T  49716110 aattattttattttttaaaaataaataaataaatcggatactctgtcgatacgtatcga 49716052  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 43365763 - 43365802
Alignment:
Q  20 aggagaaagtttttattgaaaaactaaatgaactagttgt 59  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  43365763 aggagaaagtttttattggaaatctaaatgaactagttgt 43365802  T

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Target: scaffold0756 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 989 - 1149
Alignment:
Q  7 agaggggtaatta---aggagaaagtttttattgaaaaactaaatgaactagttgtgtgagtggcatctgaggcgtatcggcagtgtatcgccgcgtgtc 103  Q
    |||||||||||||   |||||||| ||||||||| |||||||||||||||| |||| | |||||||||||||||||||           |||||||||||    
T  989 agaggggtaattatggaggagaaattttttattggaaaactaaatgaactacttgtatcagtggcatctgaggcgtat-----------cgccgcgtgtc 1077  T
Q  104 gatgacatatcagaattattttattttttaaagataaataaataaattggatactccatcgataggtatcga 175  Q
    ||  |  |||| ||||||||||||||||| || |||||||||||||| ||||||||| |||||| |||||||    
T  1078 gacaaagtatcggaattattttatttttttaaaataaataaataaatcggatactccgtcgatacgtatcga 1149  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 5062698 - 5062796
Alignment:
Q  137 ataaataaataaattggatactccatcgataggtatcgacagaatatcaagacgtatcagatacaatacggtagctattttaatgtatccgtgtttcat 235  Q
    ||||||||||||||  ||||||||||||||| ||||| || || |||||||||||||||| | |||||||||||||||||| | ||||||||| |||||    
T  5062698 ataaataaataaatcagatactccatcgatacgtatcaacggagtatcaagacgtatcaggtccaatacggtagctattttgacgtatccgtgcttcat 5062796  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 52701859 - 52701962
Alignment:
Q  89 gtatcgccgcgtgtcgatgacatatcagaattattttattttttaaagataaataaataaattggatactccatcgataggtatcgacagaatatcaaga 188  Q
    ||||||||||||||| | ||  |||| |||||||||| | ||||||| |||||||||||||||||||||||| |||||| |||||||  || ||||||||    
T  52701859 gtatcgccgcgtgtcaacgaagtatctgaattattttgtgttttaaaaataaataaataaattggatactccgtcgatacgtatcgatggagtatcaaga 52701958  T
Q  189 cgta 192  Q
    ||||    
T  52701959 cgta 52701962  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 52701801 - 52701840
Alignment:
Q  20 aggagaaagtttttattgaaaaactaaatgaactagttgt 59  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  52701801 aggagaatttttttattgaaaaactaaatgaactagttgt 52701840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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