View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5461_low_18 (Length: 367)
Name: NF5461_low_18
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 34456048 - 34455707
Alignment:
| Q |
11 |
taattctgcaaagtgtaccaaaaatatattgtattgaaacacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaattaaggttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34456048 |
taattctgcaaagtgtaccaaaaatatattgtattgaaacatagagaccacacttagtttcgtacattcttaaattcacagaaattctaaattaaggttt |
34455949 |
T |
|
| Q |
111 |
gtaaaattggtttagtatcaagatttc-aagtaagttcagacaagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcct |
209 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34455948 |
gtaaaattggtttagtatcaagatttcaaagtaagttcagacaagttagagaaagttgtgttggcatcaaacttaaataacttctcatccaatggttcct |
34455849 |
T |
|
| Q |
210 |
cttaatcgattgaatacttcctatgcttcaaatataacttcgtatatcctttgcg--tatgtctccatctttggttaacgacataaaatccattaaatga |
307 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34455848 |
cttaatcgattgtataattcgtatgcttcaaatataacttcgtatatcctttacgtatatgtctccatctttggttaacgacataaaatccattaaatca |
34455749 |
T |
|
| Q |
308 |
actgacggctatgggatcatctatgtcaggatagacttacat |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34455748 |
actgacggctatgggatcatctatgtcaggatagacttacat |
34455707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 168
Target Start/End: Complemental strand, 32268669 - 32268530
Alignment:
| Q |
29 |
caaaaatatattgtattgaaacacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagtat |
128 |
Q |
| |
|
|||||||| ||||||| || |||| ||||| | ||||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
32268669 |
caaaaataaattgtatcgatccacaaagaccgcgcttagtttcgatcgttcttaaattcacaggaattctaaattaaggtttgtaaaattggtttggtgg |
32268570 |
T |
|
| Q |
129 |
caagatttcaagtaagttcagacaagttagagaaagttgt |
168 |
Q |
| |
|
|| |||| ||| |||||| |||||||||| | |||||||| |
|
|
| T |
32268569 |
caggattgcaattaagttaagacaagttatataaagttgt |
32268530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 29020175 - 29020346
Alignment:
| Q |
50 |
cacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagtatcaagatttcaagtaagttcag |
149 |
Q |
| |
|
|||| ||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||| ||| || |||| |||| ||||| || |
|
|
| T |
29020175 |
cacatagaccacgcttagtttcaatcattcttaaattcactgaaattctaaattaaggtttgtaaaattgttttggtagcaggattgcaagcaagttaag |
29020274 |
T |
|
| Q |
150 |
acaagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgattg |
221 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
29020275 |
acaagttagagaaagttgtgttgggattagacttagataatttcacatccaatggttcctcttaatcgattg |
29020346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 1467877 - 1467830
Alignment:
| Q |
201 |
atggttcctcttaatcgattgaatacttcctatgcttcaaatataact |
248 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
1467877 |
atggttcctcttaatcgattgtatactttttatgcctcaaatataact |
1467830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 13002197 - 13002265
Alignment:
| Q |
152 |
aagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgatt |
220 |
Q |
| |
|
||||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13002197 |
aagtttgagaaagttgtgttggaattagacttagataacttctcatccaatggttcctcttaatcgatt |
13002265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 13076855 - 13076923
Alignment:
| Q |
152 |
aagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgatt |
220 |
Q |
| |
|
||||| |||||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13076855 |
aagtttgagaaagttgtgttggaattagacttagataacttctcatctaatggttcctcttaatcgatt |
13076923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 11222612 - 11222658
Alignment:
| Q |
204 |
gttcctcttaatcgattgaatacttcctatgcttcaaatataacttc |
250 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11222612 |
gttcctcttaatcgattgtatactatttatgcttcaaatataacttc |
11222658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 8717708 - 8717750
Alignment:
| Q |
208 |
ctcttaatcgattgaatacttcctatgcttcaaatataacttc |
250 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
8717708 |
ctcttaatcgattgtatactttttatgcttcaaatataacttc |
8717750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 24808365 - 24808417
Alignment:
| Q |
50 |
cacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaat |
102 |
Q |
| |
|
||||||||||||| ||||||| || ||||||||||||| |||||||||||| |
|
|
| T |
24808365 |
cacagagaccacatttagtttagaccattcttaaattcgcagaaattctaaat |
24808417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University