View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_low_2 (Length: 595)
Name: NF5461_low_2
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_2 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 16 - 595
Target Start/End: Complemental strand, 8317110 - 8316531
Alignment:
| Q |
16 |
aaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctgggaa |
115 |
Q |
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| T |
8317110 |
aaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctgggaa |
8317011 |
T |
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| Q |
116 |
attttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggagctgata |
215 |
Q |
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| T |
8317010 |
attttatggtggaggacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaaggggagctgata |
8316911 |
T |
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| Q |
216 |
aaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaa |
315 |
Q |
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| T |
8316910 |
aaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaa |
8316811 |
T |
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| Q |
316 |
gaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctttttacctgattctattttca |
415 |
Q |
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| T |
8316810 |
gaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctttttacctgattctattttca |
8316711 |
T |
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| Q |
416 |
tcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgattgccgcaaacatgacaccttggacatacagt |
515 |
Q |
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| T |
8316710 |
tcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgatttccgcaaacatgacaccttggacatacagt |
8316611 |
T |
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| Q |
516 |
caatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataac |
595 |
Q |
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| T |
8316610 |
caatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataac |
8316531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 2007 - 2125
Alignment:
| Q |
174 |
gaaaagataatgagatgtaagagcagaaaagaggagctgataaaaagatgaatggatccgaagaatttttactctcc---gattcaagatgctagagatc |
270 |
Q |
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| T |
2007 |
gaaaagataatcagatgtactaggagaaaaggggagtttataaaaatatgaatggatcctaagattcttgactctcctattattcaagatggtagagatc |
2106 |
T |
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| Q |
271 |
caagtattttgaagggata |
289 |
Q |
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| T |
2107 |
catgtattttgaagtgata |
2125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 28111704 - 28111777
Alignment:
| Q |
256 |
aagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaa |
329 |
Q |
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| T |
28111704 |
aagatgctagagatccatgtattttgaagtgatacacaacgtttgttatagatcacaaaagaaaagttttccaa |
28111777 |
T |
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