View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_low_20 (Length: 360)
Name: NF5461_low_20
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 28 - 345
Target Start/End: Complemental strand, 46094857 - 46094536
Alignment:
| Q |
28 |
aatgaaacacatgataagattagattttatcatgaccatctgaaatggatttaggtgtagagaggtatggggttggtgccctcaccatattttgttcatg |
127 |
Q |
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| T |
46094857 |
aatgaaacacatgataagattagattttatcatgaccatctgaaatggatttaggtgtagagaggtatggggttggtgccctcaccatattttgttcatg |
46094758 |
T |
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| Q |
128 |
agaggaatattatgaaatatatcttacgataacaataagagaggtatgattaacgattctctcctagggttagcgccgctgactttccgtagtgagtgta |
227 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46094757 |
agaggaatattatgaaatatattttacaataacaataagagaggtatgattaacaattctctcctagggttagcgccgctgactttccgtagtgagtgta |
46094658 |
T |
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| Q |
228 |
ttgatgtcgttcggtaagttttgctttcctgaacgt----ttgtgtttttgctttccataaagccttgatgcctttgttttcttttcatgcctgtgtcat |
323 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46094657 |
ttgatgtcgttcggtaagttttgctttcctgaacgtttgtttgtgtttttgctttccataaagccttgatgcctttgttttcttttcatgcctgtgtcat |
46094558 |
T |
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| Q |
324 |
gcgattatgcttcctgcctttg |
345 |
Q |
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|||||||||||||||||||||| |
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| T |
46094557 |
gcgattatgcttcctgcctttg |
46094536 |
T |
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