View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5461_low_24 (Length: 345)
Name: NF5461_low_24
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_24 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 8974490 - 8974812
Alignment:
| Q |
8 |
cttagctgcatggcctacaaatattcctgtgttggcgtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974490 |
cttagctgcatggcctacaaatattcctgtgttggagtttgggtcacgtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcct |
8974589 |
T |
|
| Q |
108 |
catgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgata |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974590 |
catgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgata |
8974689 |
T |
|
| Q |
208 |
atactaaggaacttataaaagacattggaaaagggaacaacgtagcaacaccttttgcacaaggagctggtcatatcaaccccaacagagcacttaaccc |
307 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
8974690 |
atactaaggaactcataaaagacattggaaaaggtaacaacgtagcaacaccttttgcacaaggagctggtcatatcaaccccaacaaagcacttaaccc |
8974789 |
T |
|
| Q |
308 |
tggacttgtttatgatgttggtg |
330 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8974790 |
tggacttgtttatgatgttggtg |
8974812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 8963094 - 8963416
Alignment:
| Q |
8 |
cttagctgcatggcctacaaatattcctgtgttggcgtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcct |
107 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
8963094 |
cttagctgcatggcctccaaatgttcctgtgttggattttgggtctcataaagtcgtcaacaagttcaattttttaactggaacatctatgtcatgtcct |
8963193 |
T |
|
| Q |
108 |
catgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgata |
207 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8963194 |
catgttgccggtgtaggagcacttttgaaaggagcacatgctgattggagcccgacagctattaggtcggcaatgatgacaacatcagacatatttgata |
8963293 |
T |
|
| Q |
208 |
atactaaggaacttataaaagacattggaaaagggaacaacgtagcaacaccttttgcacaaggagctggtcatatcaaccccaacagagcacttaaccc |
307 |
Q |
| |
|
| |||||||||||||| |||||||||||||||| |||| | |||||||||||||||| |||||||||||||||||||| || | ||||||| |||| |
|
|
| T |
8963294 |
acactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatcaaccctaataaagcacttgaccc |
8963393 |
T |
|
| Q |
308 |
tggacttgtttatgatgttggtg |
330 |
Q |
| |
|
||| |||||||||||| |||||| |
|
|
| T |
8963394 |
tggtcttgtttatgatattggtg |
8963416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 58 - 330
Target Start/End: Complemental strand, 8945940 - 8945668
Alignment:
| Q |
58 |
aagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggag |
157 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| |||| || | |||||||||||| |
|
|
| T |
8945940 |
aagtcttcaacaagttcaaatttttaactggaacatctacgtcatgtcctcatgttgccggtgtaggagcacttttaaaaggagcgcgtgttgattggag |
8945841 |
T |
|
| Q |
158 |
ccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaacttataaaagacattggaaaagggaacaacgtagcaaca |
257 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||| |||||| ||||||||||||||||| ||| |||||||||| |||||| || | || ||||| |
|
|
| T |
8945840 |
ccctgcagctataaggtcggcaattatgacaacatcaaacatatatgataatactaaggaacatatcaaagacattgaaaaaggtaatgaagttgcaact |
8945741 |
T |
|
| Q |
258 |
ccttttgcacaaggagctggtcatatcaaccccaacagagcacttaaccctggacttgtttatgatgttggtg |
330 |
Q |
| |
|
||| ||||| ||||||||| || | | ||||| ||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
8945740 |
cctcttgcattgggagctggttatgttgatcccaatagagcacttgaccctggtcttgtttatgatgttggtg |
8945668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 8958080 - 8958402
Alignment:
| Q |
8 |
cttagctgcatggcctacaaatattcctgtgttggcgtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcct |
107 |
Q |
| |
|
||||||||||||||| |||||| |||||||| ||| || ||| | ||| ||||||||||||||||| | ||||||||||||||||| ||| |||| |
|
|
| T |
8958080 |
cttagctgcatggcccacaaatgttcctgtgatgggtttggggactcataagatcttcaacaagttcaatgtgataagtggaacatctatggcatgtcct |
8958179 |
T |
|
| Q |
108 |
catgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgata |
207 |
Q |
| |
|
|||||||| ||||| | ||||||||||||| ||||| | ||||||||||||||| || ||| |||| ||||| |||||||| || |||||| |||||| |
|
|
| T |
8958180 |
catgttgcaggtgtcgcggcacttttgaaaggagcacacggtgattggagccctgccgcgattcggtcggcaattatgacaacgtcggacataattgata |
8958279 |
T |
|
| Q |
208 |
atactaaggaacttataaaagacattggaaaagggaacaacgtagcaacaccttttgcacaaggagctggtcatatcaaccccaacagagcacttaaccc |
307 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| | || || | |||||| ||||||||| |||||||||||| | || || || ||||||||| |||| |
|
|
| T |
8958280 |
atactaaggaacatattaaagacattggaaatgataataaagcagcaactccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccc |
8958379 |
T |
|
| Q |
308 |
tggacttgtttatgatgttggtg |
330 |
Q |
| |
|
||| ||| ||||||||||||||| |
|
|
| T |
8958380 |
tggtcttatttatgatgttggtg |
8958402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 275
Target Start/End: Complemental strand, 9948363 - 9948194
Alignment:
| Q |
105 |
cctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttg |
204 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||||||||||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
9948363 |
cctcatgttgctggtgttggagcacttttgaaaggagcacatgctgattgga-ccctgcagctataaggtcagcaattatgacaacatcaaccatatttg |
9948265 |
T |
|
| Q |
205 |
ataatactaaggaacttataaaagacattggaaaagggaacaacgtagcaacaccttttgcacaaggagct |
275 |
Q |
| |
|
||||| ||||||||| ||| |||||||| ||| |||| ||||| || ||||| ||| ||||| ||||||| |
|
|
| T |
9948264 |
ataatgctaaggaacatatcaaagacatcggagaaggtaacaaagttgcaactcctcttgcattaggagct |
9948194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 34962770 - 34962451
Alignment:
| Q |
8 |
cttagctgcatggcctacaaatattcctgtgttggcgtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcct |
107 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||| |||| ||| |||| | |||| ||| |||||||| ||||||||||||||||| | | ||| |
|
|
| T |
34962770 |
cttagcggcatggcctacaaatgttcctgtgatggaatttgagtctcataaaattttcagcaaattcaatttgataagtggaacatctatggcgtgccct |
34962671 |
T |
|
| Q |
108 |
catgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgata |
207 |
Q |
| |
|
|||||||| ||||| | || |||||||||| | ||| |||||||||||| ||||| ||| |||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
34962670 |
catgttgcaggtgtcgcggcgcttttgaaaggagtgcatagtgattggagcccagcagcaattcggtcggcaataatgacaacatcagacatatttgata |
34962571 |
T |
|
| Q |
208 |
atactaaggaacttataaaagacattggaaaagggaacaacgtagcaacaccttttgcacaaggagctggtcatatcaaccccaacagagcacttaaccc |
307 |
Q |
| |
|
|| ||||||||| || ||||||||||||| || |||| | |||||||||||||||| |||||||||||| | || || || ||||||||| |||| |
|
|
| T |
34962570 |
attctaaggaacaaatcaaagacattggaacag---acaaagcagcaacaccttttgcattgggagctggtcatgttaatcctaatagagcacttgaccc |
34962474 |
T |
|
| Q |
308 |
tggacttgtttatgatgttggtg |
330 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
34962473 |
tggtcttgtttatgatgttggtg |
34962451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 58 - 323
Target Start/End: Complemental strand, 21687103 - 21686838
Alignment:
| Q |
58 |
aagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggag |
157 |
Q |
| |
|
||||||| ||||| |||||||| || ||||||||||||||||| ||| |||||||| ||||||| ||| ||||| |||| ||||| || |||||| |
|
|
| T |
21687103 |
aagtctttaacaacttcaatttgatagatggaacatctatgtcatgtccacatgttgcaggtgtagcagcgcttttaaaaggggcacacaatggttggag |
21687004 |
T |
|
| Q |
158 |
ccctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaacttataaaagacattggaaaagggaacaacgtagcaaca |
257 |
Q |
| |
|
||| || |||||||||| ||||| |||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| || |||| | |||||| |
|
|
| T |
21687003 |
cccgtcatctattaggtcggcaattatgacaacatcagacatattagacaatactaaggaacatatcaaagacattggaaatggtaacagagcagcaact |
21686904 |
T |
|
| Q |
258 |
ccttttgcacaaggagctggtcatatcaaccccaacagagcacttaaccctggacttgtttatgat |
323 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || ||||||||| | ||||| |||||||||||| |
|
|
| T |
21686903 |
ccttttgcattgggagctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgat |
21686838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 19375864 - 19375625
Alignment:
| Q |
8 |
cttagctgcatggcctacaaatattcctgtgttggcgtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcct |
107 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||| || ||| | |||||||||||||||||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
19375864 |
cttagctgcatggccaacaaatgttcatgtgttggatttggggacttttaaagtcttcaacaagttcaatttgataagtggaacatctatggcatgtcct |
19375765 |
T |
|
| Q |
108 |
catgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctattaggtcagcaatgatgacaacatcagacatatttgata |
207 |
Q |
| |
|
|| ||||| ||| ||| | ||||||||||| ||||||||||||||||| || |||| ||| | || || || |||||||||||||||||| | || | |
|
|
| T |
19375764 |
cacgttgcaggtatagcattacttttgaaaggagcacatgttgattggagtccgacagcaattcgttctgcgattatgacaacatcagacataatagaca |
19375665 |
T |
|
| Q |
208 |
atactaaggaacttataaaagacattggaaaagggaacaa |
247 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
19375664 |
atactacaaaacttatgaaagacattggaaaaggtaacaa |
19375625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 324
Target Start/End: Original strand, 49008292 - 49008555
Alignment:
| Q |
61 |
tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaag--ctgcacatgttgattggagc |
158 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||| ||||||| ||||||||| |||| ||||| ||| ||||||| |
|
|
| T |
49008292 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcac-ccttg-ttggagc |
49008389 |
T |
|
| Q |
159 |
cctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaacttataaaagacattggaaaagggaacaacgtagcaacac |
258 |
Q |
| |
|
|| ||||| ||||| || || |||||||||||||||||||| || || || || || ||||| || | ||||||||| || || ||| ||| ||| |
|
|
| T |
49008390 |
ccagcagccattagatcggctatgatgacaacatcagacatgttagacaacacaaaagaactcatcacagacattggtaatggttacagaccagcttcac |
49008489 |
T |
|
| Q |
259 |
cttttgcacaaggagctggtcatatcaaccccaacagagcacttaaccctggacttgtttatgatg |
324 |
Q |
| |
|
|||| || ||||| || |||||||| ||||| ||||||||| | ||||||||||||||||||| |
|
|
| T |
49008490 |
ctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatg |
49008555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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