View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_low_26 (Length: 345)
Name: NF5461_low_26
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 46 - 278
Target Start/End: Complemental strand, 6246470 - 6246239
Alignment:
| Q |
46 |
acaaagaccaacctaaattatggaagcagataatagagatatacctacagaatgttttgaaaattcttctt---ttgacaggctaaatcttaccgaacat |
142 |
Q |
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| T |
6246470 |
acaaagaccaacctaaattatggaagcagataatagagagatacctacagaatgttttgaaaattcttcttcttttgacaggctaaatcttaccgaacat |
6246371 |
T |
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| Q |
143 |
tggaatctaccaactgcttaaacaaagaaacaaacaaaaaaggaaaggtaactgactaagtgtgtgtgcgcacgtgacaagcagtaattaaattaggaaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6246370 |
tggaatctaccaactgcttaaacaaagaaacaaa----aaaggaaaggtaactgactaagtgtgtgtgcgcacgtgacaagcagtaattaaattaggaaa |
6246275 |
T |
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| Q |
243 |
cccaaattccacgaatctaataaccctaaccataca |
278 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6246274 |
cccaaattccacgaatctaataaccctaaccataca |
6246239 |
T |
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