View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_low_3 (Length: 547)
Name: NF5461_low_3
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 46 - 529
Target Start/End: Original strand, 7376069 - 7376552
Alignment:
| Q |
46 |
tatcatttctctttttaaagttaggatttgtctccattgaggtcgatatgtgttgcatccatatttatcaccatttcttttttctttaaacatttttacc |
145 |
Q |
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| T |
7376069 |
tatcatttctctttctaaaatcaagatttgtctccattcgggtcgatatgt--tgtatccatatttatcaccatttcttttttctttaaacatttttacc |
7376166 |
T |
|
| Q |
146 |
aatttaaataaaaacaatagttt-ccataaaggaatnnnnnnnn-ggatatgatattgaagtcaaataaaatttgttaaaaaacctcaattaaattcaaa |
243 |
Q |
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| T |
7376167 |
aatttaaataaaaacaatagttttccataaaggaataaaaaaaaaggatatgatattgaagtcaaataaaatttgttaaaaaacctcaattaaattcaga |
7376266 |
T |
|
| Q |
244 |
tataccgttttaagataaatagatcagttaaaaatgttacaaatattgtaccnnnnnnnnngttataaatatacctccaccgaggagctcctaatccaag |
343 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
7376267 |
tatatcgttttaagataaatagatcagttaaaaatgttacaaatattgtaccaaaaaaaatgttataaatatacctccaccgaggagctcctaatccgag |
7376366 |
T |
|
| Q |
344 |
aaaatactcacttttaaatcaaaaacttacgttcacatggaacacaaatgataacggactacttccaaaagtaaataggttccatcatgatgaacgatag |
443 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7376367 |
aaaatactcacttttaaaccaaaaacttacgttcacatggaacacaaatgataacgggctacttccaaaagtaaataggttccatcatgatgaacgatag |
7376466 |
T |
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| Q |
444 |
attgaaaagggtgtggaaactaactcatgacactatcagaaaacctgtgattagccacggtcggctattagccacggtaaaataac |
529 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
7376467 |
attgaaaagggtgtggaaactcactcatgacacgatcagaaaattggtgattagccacagtcggctattagccacggtaaaataac |
7376552 |
T |
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