View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_low_30 (Length: 313)
Name: NF5461_low_30
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 65 - 295
Target Start/End: Original strand, 53424959 - 53425189
Alignment:
| Q |
65 |
ttgatataccgcagagcgctatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaac |
164 |
Q |
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| T |
53424959 |
ttgatataccgcagagcgctatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaac |
53425058 |
T |
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| Q |
165 |
agtcaacatccaaggagcatcattaataactgtatttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaac |
264 |
Q |
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| T |
53425059 |
agtcaacatccaaggagcatcattaataactgtatttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaac |
53425158 |
T |
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| Q |
265 |
gctccgattgcaatcgggtcagttgttaagt |
295 |
Q |
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| T |
53425159 |
gctccgattgcaatcgggtcagttgttaagt |
53425189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 279
Target Start/End: Original strand, 53432124 - 53432314
Alignment:
| Q |
89 |
attgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcatt |
188 |
Q |
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| T |
53432124 |
attgtaccttgataacttctttattacccaagacaacgttggactgaaattcacggtcaatagttgtggcaccaacggttaatatccaaggagcatcatt |
53432223 |
T |
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| Q |
189 |
aataactgtatttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaacgctccgattgcaatc |
279 |
Q |
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| T |
53432224 |
agtaagtgtacttctctccggtccagcattcccggcagcgcaaaccaccacgatgccgcgctccacggcatggaacgctcctattgcaatc |
53432314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 272
Target Start/End: Original strand, 53308963 - 53309156
Alignment:
| Q |
79 |
agcgctatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaag |
178 |
Q |
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| T |
53308963 |
agcgttataaattgtacctcaataactttgccactacctaaaacaacgttggactgcatatcacaatcgatggtagtggctacaacagttaatatccaag |
53309062 |
T |
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| Q |
179 |
gagcatcattaataactgta-tttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaacgctccgat |
272 |
Q |
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| T |
53309063 |
gagcgtcattaacaactgtactttgtgt-tggtccatcattcccagcagagcaaacaaccactatgccatgctccacagcatggaatgctccgat |
53309156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 279
Target Start/End: Complemental strand, 48372558 - 48372370
Alignment:
| Q |
91 |
tgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcattaa |
190 |
Q |
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| T |
48372558 |
tgtaccttgacaactttgttattacccaagacaacattggactgaaagtcacggtcaatagtggtggcagcaaccgttaatatccaaggtgcatcattaa |
48372459 |
T |
|
| Q |
191 |
taactgtatttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaacgctccgattgcaatc |
279 |
Q |
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| T |
48372458 |
caacagtacttagctctggaccagaattcccagcggagcaaaccaccacgatgccgtgctccatggcatggaacgctccaattgcaatc |
48372370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 275
Target Start/End: Original strand, 26097502 - 26097686
Alignment:
| Q |
91 |
tgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagcatcattaa |
190 |
Q |
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| T |
26097502 |
tgtaccttgacaactttgttattacccaagacaacattggactgaaagtcacgatcaatggtagtggcagcaaccgttagtatccaaggagcgtcattaa |
26097601 |
T |
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| Q |
191 |
taactgtatttctctctgatccttcattcccagcactgcaaaccaccactataccacgctccactgcgtggaacgctccgattgc |
275 |
Q |
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| T |
26097602 |
caactgtactttgctccggtccagaattcccagcagagcaaatcaccacaatgccgcgctctacagcatggaaagctccaattgc |
26097686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 53320744 - 53320858
Alignment:
| Q |
84 |
tatagattgtaccttgataactttgttactacccaaaacaatattggactgaagatcacgatcgatagtggtggctgcaacagtcaacatccaaggagca |
183 |
Q |
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| T |
53320744 |
tatagtttgtaccttgatcactttgccattacccaagacaacattagactggagatcacggtcaattgttgtggctccaacggttaatatccagggagca |
53320843 |
T |
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| Q |
184 |
tcattaataactgta |
198 |
Q |
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|||||| ||||||| |
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| T |
53320844 |
tcattagaaactgta |
53320858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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