View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5461_low_35 (Length: 256)

Name: NF5461_low_35
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5461_low_35
NF5461_low_35
[»] chr5 (18 HSPs)
chr5 (13-256)||(1163574-1163817)
chr5 (13-254)||(1849919-1850163)
chr5 (13-140)||(3299487-3299617)
chr5 (13-140)||(3392380-3392510)
chr5 (13-151)||(40418237-40418375)
chr5 (13-150)||(39879768-39879905)
chr5 (13-151)||(38987659-38987797)
chr5 (13-150)||(39726372-39726509)
chr5 (154-256)||(3299652-3299754)
chr5 (154-256)||(3392545-3392647)
chr5 (13-150)||(39399813-39399950)
chr5 (13-137)||(39168800-39168924)
chr5 (154-256)||(40418417-40418516)
chr5 (191-256)||(38987873-38987938)
chr5 (191-256)||(39726592-39726657)
chr5 (191-256)||(39879988-39880053)
chr5 (209-256)||(39169041-39169088)
chr5 (215-256)||(39400042-39400083)
[»] chr4 (3 HSPs)
chr4 (13-140)||(25912295-25912422)
chr4 (154-250)||(25912146-25912239)
chr4 (72-137)||(44444772-44444837)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 1163817 - 1163574
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacacttttcaaatcaggactcatcttggtcgtattttaaaacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163817 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacacttttcaaatcaggactcatcttggtcgtattttaaaacc 1163718  T
Q  113 cggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163717 cggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgtt 1163618  T
Q  213 caggataagtgggaatctggttatcaactcttcttaaaagatct 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1163617 caggataagtgggaatctggttatcaactcttcttaaaagatct 1163574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 1849919 - 1850163
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtattttaaa 109  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||    
T  1849919 aatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtattttaaa 1850018  T
Q  110 acccggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcct 209  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1850019 acctggtgaccatgctcttggttatgacctgcctgaaggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttattcct 1850118  T
Q  210 gttcaggataagtgggaatctggttatcaactcttcttaaaagat 254  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  1850119 gttcaggataagtgggaatctgattatcaactcttcttaaaagat 1850163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 3299487 - 3299617
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtattttaaa 109  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||    
T  3299487 aatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaa 3299586  T
Q  110 acccggtgaccatgctcttggttatgacctg 140  Q
    |||||||||||||||||||||||||||||||    
T  3299587 acccggtgaccatgctcttggttatgacctg 3299617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 3392380 - 3392510
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcacac---ttttcaaatcaggactcatcttggtcgtattttaaa 109  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||    
T  3392380 aatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaa 3392479  T
Q  110 acccggtgaccatgctcttggttatgacctg 140  Q
    |||||||||||||||||||||||||||||||    
T  3392480 acccggtgaccatgctcttggttatgacctg 3392510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 40418237 - 40418375
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    ||||| |||||||| ||||  | ||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||    
T  40418237 aatattgtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatga-cacaacttttcaaatcaggactcatcttggtcgtattttaaaac 40418335  T
Q  112 ccggtgaccatgctcttggttatgacctgcctgaaggaga 151  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  40418336 ccggtgaccatgctcttggttatgacctgtctggaggaga 40418375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 39879768 - 39879905
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||    
T  39879768 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatcttggtcgtattttaaaac 39879866  T
Q  112 ccggtgaccatgctcttggttatgacctgcctgaaggag 150  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  39879867 ccggtgaccatgctcttggttatgacctgtctggaggag 39879905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 38987659 - 38987797
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||||||||| |||||||| |||||||    
T  38987659 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatctcggtcgtatcttaaaac 38987757  T
Q  112 ccggtgaccatgctcttggttatgacctgcctgaaggaga 151  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  38987758 ccggtgaccatgctcttggttatgacctgtctggaggaga 38987797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 39726372 - 39726509
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| |||||||||| | |||| |||||||||||||||||||||| |||||||| |||||||    
T  39726372 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatctcggtcgtatcttaaaac 39726470  T
Q  112 ccggtgaccatgctcttggttatgacctgcctgaaggag 150  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  39726471 ccggtgaccatgctcttggttatgacctgtctggaggag 39726509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 3299652 - 3299754
Alignment:
Q  154 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga 253  Q
    |||||||||| ||||| ||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  3299652 ccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaaga 3299751  T
Q  254 tct 256  Q
    |||    
T  3299752 tct 3299754  T

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Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 3392545 - 3392647
Alignment:
Q  154 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga 253  Q
    |||||||||| ||||| ||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  3392545 ccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaaga 3392644  T
Q  254 tct 256  Q
    |||    
T  3392645 tct 3392647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 39399813 - 39399950
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    |||| ||||||||| ||||| | |||||||||||  || || ||||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||     
T  39399813 aataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatga-cacaacttttcaaatcaggactcatcttggtcatattttaaaat 39399911  T
Q  112 ccggtgaccatgctcttggttatgacctgcctgaaggag 150  Q
    |||||||| ||||||||||||||||| || ||| |||||    
T  39399912 ccggtgactatgctcttggttatgacttgtctggaggag 39399950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 39168800 - 39168924
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    ||||||| |||||| ||||| | |||||||||||  ||||| ||||||||||| | |||| ||||||||||||  |||||||| |||| ||||||||||     
T  39168800 aatatcggttagctgatgccgtggttgctcgtgtggaagattttggaaataatga-cacaacttttcaaatcaaaactcatctaggtcatattttaaaat 39168898  T
Q  112 ccggtgaccatgctcttggttatgac 137  Q
    |||||||| |||||||||||||||||    
T  39168899 ccggtgactatgctcttggttatgac 39168924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 40418417 - 40418516
Alignment:
Q  154 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaaga 253  Q
    |||||||||| ||||||||||||| |||  |||||   ||||||||||||||| || |||| |||||||||||||||| ||||||||||||||| || ||    
T  40418417 ccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctcttcatgataagtgggaatctgattatcaactcttcttcaatga 40418513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 38987873 - 38987938
Alignment:
Q  191 gaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatct 256  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||||||||||||||| || |||||    
T  38987873 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatct 38987938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 39726592 - 39726657
Alignment:
Q  191 gaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatct 256  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||||||||||||||| || |||||    
T  39726592 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatct 39726657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 39879988 - 39880053
Alignment:
Q  191 gaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatct 256  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||||||||||||||| || |||||    
T  39879988 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatct 39880053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 39169041 - 39169088
Alignment:
Q  209 tgttcaggataagtgggaatctggttatcaactcttcttaaaagatct 256  Q
    |||| ||| |||||||||||||| |||||||||||| |||||||||||    
T  39169041 tgttgagggtaagtgggaatctgattatcaactctttttaaaagatct 39169088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 39400042 - 39400083
Alignment:
Q  215 ggataagtgggaatctggttatcaactcttcttaaaagatct 256  Q
    |||||||||| |||||| |||||||||||||||| |||||||    
T  39400042 ggataagtggcaatctgattatcaactcttcttagaagatct 39400083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 25912422 - 25912295
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 111  Q
    |||||||||||||| |||   | ||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||    
T  25912422 aatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaataatga-cacaacttttcaaatcaggactcatcttggtcgtattctaaaac 25912324  T
Q  112 ccggtgaccatgctcttggttatgacctg 140  Q
    ||| |||||||||||||||||||||||||    
T  25912323 ccgatgaccatgctcttggttatgacctg 25912295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 25912239 - 25912146
Alignment:
Q  154 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaa 250  Q
    |||||||||| ||||||||||||| |||  |||||   ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  25912239 ccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaa 25912146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 44444837 - 44444772
Alignment:
Q  72 acttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttatgac 137  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  44444837 acttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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