View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_low_6 (Length: 496)
Name: NF5461_low_6
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 24 - 484
Target Start/End: Original strand, 36330727 - 36331196
Alignment:
| Q |
24 |
ttccctcagcatttgcatccctctttgttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaat------a |
117 |
Q |
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| T |
36330727 |
ttccctcagcatttgcatccctctttgttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaatagaaata |
36330826 |
T |
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| Q |
118 |
gaaatagaagggatgagttgcctgaaacatgaataattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaa |
217 |
Q |
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| T |
36330827 |
gaaatagaagggatgagttgcctgaaacatgaagaattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaa |
36330926 |
T |
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| Q |
218 |
cgaaactatttctatccaaacagagcgttaaaaggaaaagctaccttgaaatgacaaggaatgcgatcctttacggaaacagggtcgtagcgcttattct |
317 |
Q |
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| T |
36330927 |
ggaaactatttctatccaaacagagcgttaaaaggaaaagctaccttgaaatgagaaggaatgcgatcctttacggaaacagggtcgtagcgcttattct |
36331026 |
T |
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| Q |
318 |
tcatagactcttcctctgcatcttgttcctcgtattcata---aacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaaga |
414 |
Q |
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| T |
36331027 |
tcatagactcttcctctgcatcttgttcctcgtattcataaacaacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaaga |
36331126 |
T |
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| Q |
415 |
tgaaggcaaacgaggattggttttcgactttttacttcggaggttggtgccgttcatctgttttcgtttc |
484 |
Q |
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| T |
36331127 |
tgaaggcgaacgaggattggttttcgactttttacttcggaggttggtgtcgttcatctgttttcgtttc |
36331196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 44371826 - 44371862
Alignment:
| Q |
394 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
430 |
Q |
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| T |
44371826 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44371862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 44380681 - 44380717
Alignment:
| Q |
394 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
430 |
Q |
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| T |
44380681 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44380717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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