View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_low_8 (Length: 491)
Name: NF5461_low_8
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 116 - 486
Target Start/End: Complemental strand, 45208085 - 45207715
Alignment:
| Q |
116 |
ggaattagattattttttgaaagaagaaattgaatatcgacagataaaataattacttttatggacaaagataaaatgtttactttt-ctactatt---a |
211 |
Q |
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| T |
45208085 |
ggaattagattattttttgaatgaagaaattgaatatcgacagataaaataattacttttatggacaaagataaaatgtttactttttctactatttcaa |
45207986 |
T |
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| Q |
212 |
tttcaatatatatgatataataaaaagagatnnnnnnnngtttgatgtgtttccatatcatccagatatatagtagcgtcacgtcagttacaacaagcac |
311 |
Q |
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| T |
45207985 |
tatatacatatatgatataataaaaagagataaaaaaa-gtttgatgtgtttccatatcatccagatatatagtagcgtcacgtcagttacaacaagcac |
45207887 |
T |
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| Q |
312 |
tgctgcaattgcaatatatctcggtcactgcttttgtgacacacggcagagaaagagattgatacgcaatatgtggccattcagcaagaaaggtgtttct |
411 |
Q |
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| T |
45207886 |
tgc---aattgcaatatatctcggtcactgcttttgtgacacacggcagagaaagagattgatacgcaatatgtggccattcagcaagaaaggtgtttct |
45207790 |
T |
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| Q |
412 |
ggtttttcatggaactcaactgctgaacaagtcacacatggaatcgatgctactggtctcactgcctttgctact |
486 |
Q |
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| T |
45207789 |
ggtttttcatggaactcaactgctgaacaagtcacacatggaatcgatgctactggtctcactgccattgttact |
45207715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 382 - 476
Target Start/End: Complemental strand, 45214241 - 45214147
Alignment:
| Q |
382 |
atgtggccattcagcaagaaaggtgtttctggtttttcatggaactcaactgctgaacaagtcacacatggaatcgatgctactggtctcactgc |
476 |
Q |
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| T |
45214241 |
atgtggccattcagcaggaaaggggtatctgggttttcatggaagtcaactgctgaagaagttactcatggaattgatgcaactggcctcactgc |
45214147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 382 - 476
Target Start/End: Complemental strand, 45232960 - 45232866
Alignment:
| Q |
382 |
atgtggccattcagcaagaaaggtgtttctggtttttcatggaactcaactgctgaacaagtcacacatggaatcgatgctactggtctcactgc |
476 |
Q |
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| T |
45232960 |
atgtggccattcagcaagaaaggaatttctggtttctcagggagttcaactgctgaacaagtcactcatggaattgatgcaattggcctcactgc |
45232866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 382 - 476
Target Start/End: Complemental strand, 45249149 - 45249055
Alignment:
| Q |
382 |
atgtggccattcagcaagaaaggtgtttctggtttttcatggaactcaactgctgaacaagtcacacatggaatcgatgctactggtctcactgc |
476 |
Q |
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| T |
45249149 |
atgtggccattcagcaagaaaggggtttctggattctcagggaattcaactgctgaaaaagttactcatggaattgatgcatctggactcactgc |
45249055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 45208184 - 45208149
Alignment:
| Q |
17 |
aataactaaatgaaataaatttaatgattttagacg |
52 |
Q |
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| T |
45208184 |
aataattaaatgaaataaatttaatgattttagacg |
45208149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 477
Target Start/End: Complemental strand, 45234522 - 45234460
Alignment:
| Q |
415 |
ttttcatggaactcaactgctgaacaagtcacacatggaatcgatgctactggtctcactgcc |
477 |
Q |
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| T |
45234522 |
ttttcatggagatcaaccgctgaacaagtcactcatggaattgatgcaactgacctcactgcc |
45234460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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