View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5461_low_9 (Length: 462)
Name: NF5461_low_9
Description: NF5461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5461_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 449
Target Start/End: Complemental strand, 28409378 - 28408946
Alignment:
| Q |
14 |
ttatggacatgttataaactatttttataatctccgaaaccagtcatacagttgattctaaaaaccaactggaaataacatcgagtagcctaccgtgtgt |
113 |
Q |
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| T |
28409378 |
ttatggacatgttataaactatttttataatctccg---ccagtcatacagttgattctaaaaaccaactggaaataacatcgagtagcctaccgtgtgt |
28409282 |
T |
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| Q |
114 |
atcatgagttatcgagaattagtattgatattgagatggaatttgaccttttggttggtggtaggaatcgtttttactccatcttgaggagtattagtta |
213 |
Q |
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| T |
28409281 |
atcatgagttatcgagaattagtattgatattgagatggaatttgaccttttggttggtggtaggaatcgtttttactccatcttgaggagtattagtta |
28409182 |
T |
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| Q |
214 |
tgacattgttgctatatttattacttttacatttggtcagcaaataagagtgcttctgtatttgggactatcataagttaaaattcaaactattgcattg |
313 |
Q |
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| T |
28409181 |
tgacattgttgctatatttattacttttacatttggtcagcaaataagagtgcatctgtatttgggactatcataagttaaaattcaaactattgcattg |
28409082 |
T |
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| Q |
314 |
caggacaatgcaaacggctgttggagtctttggtggggaagcaaacactgatggagttaataaacctcctctgatgattgaaaatgtgggacacagtgat |
413 |
Q |
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| T |
28409081 |
caggacaatgcaaacggctgttggagtctttggtggggaagcaaacactgatggagttaataaacctcctctgatgattgaaaatgtgggacacagtgat |
28408982 |
T |
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| Q |
414 |
catcctgcagtttctagtctaaactgcccaccattc |
449 |
Q |
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| T |
28408981 |
catcctgcagtttctagtctaaactgcccaccattc |
28408946 |
T |
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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 402
Target Start/End: Original strand, 52014512 - 52014610
Alignment:
| Q |
304 |
tattgcattgcaggacaatgcaaacggctgttggagtctttggtggggaagcaaacactgatggagttaataaacctcctctgatgattgaaaatgtgg |
402 |
Q |
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|||| ||||||||||| |||||||| || ||||||||||||||||| || ||| |||||||||||||| || ||||||||||||| ||| ||||||| |
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| T |
52014512 |
tatttcattgcaggaccatgcaaacagcagttggagtctttggtggtgaggcacacactgatggagttgatgcccctcctctgatgaatgagaatgtgg |
52014610 |
T |
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