View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5462-Insertion-1 (Length: 873)
Name: NF5462-Insertion-1
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5462-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 305 - 563
Target Start/End: Original strand, 30337737 - 30337985
Alignment:
| Q |
305 |
aaatagaaaaggagttttataggtttgaaacctattttcaacataaattttaatggatttgaagaagatgaaaacggtgagggaaataagatgaaaatct |
404 |
Q |
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| T |
30337737 |
aaatagaaaaggagttttataggtttgaaacctattttcaacataaattttaatggatttgaagaagatgaaaacggtgaaggaaataagatgaaaatct |
30337836 |
T |
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| Q |
405 |
tagcattttatatcaatgaataaaattaatcaaaaatatatatgttgactaaaatcttgtttgaacttgtcacatgagcactcttannnnnnnnggtgta |
504 |
Q |
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| T |
30337837 |
tagcattttatatcaatcaataaaattaatcaaaaatatatatgttgactaaaatcttgtttgaacttgtcacataagcactctt---ttttttggtgta |
30337933 |
T |
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| Q |
505 |
catcacacgagcactctatataaatataaacccattgtaatttagtatacatctataca |
563 |
Q |
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| T |
30337934 |
catcacacgagcactctatataaa-------ccattgtaatttagtatacatctataca |
30337985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 586 - 695
Target Start/End: Original strand, 30337970 - 30338080
Alignment:
| Q |
586 |
agtatacatctatacataaaa-agtaatttagcactaatagtttgtttttagagaaagtaatttagttgtcacatttatacataaagtgcaaagacttga |
684 |
Q |
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| T |
30337970 |
agtatacatctatacataaaaaagtaatttagcactaatagtttgtttttagagaaagtaatttagttgtcacatttatacataaagtgcaaagacttga |
30338069 |
T |
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| Q |
685 |
gttaatttaga |
695 |
Q |
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| T |
30338070 |
gttaatttaga |
30338080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 741 - 872
Target Start/End: Original strand, 30338099 - 30338238
Alignment:
| Q |
741 |
ttaaaattgctaaccttatgtttcgaaagtcgcaaaaactcacaaagccagaattnnnnnnnnnnnnnnc--------gaatgataatacaaaatgcgta |
832 |
Q |
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| T |
30338099 |
ttaaaattgctaaccttatgtttcgaaagtagcaaaaactcacaaagccagaattaaaaaaaaaaaaaacaaaaaaacgaatgataatacaaaatgcgta |
30338198 |
T |
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| Q |
833 |
aagtagcaaaaaccgtgtttggggatcttgcatcgaaggt |
872 |
Q |
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| T |
30338199 |
aagtagcaaaaaccgtgtttggggatcttgcatcgaaggt |
30338238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 30337639 - 30337714
Alignment:
| Q |
12 |
caatgaatattggattaccaaaaaggataatttagattaccaataagatctataagaaatttaaagacattaataa |
87 |
Q |
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| T |
30337639 |
caatgaatattggattaccaaaaagcatgatttagattaccaataagatctataagaaatttaaagaaattaataa |
30337714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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