View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5462-Insertion-2 (Length: 852)
Name: NF5462-Insertion-2
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5462-Insertion-2 |
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| [»] chr8 (11 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 300 - 852
Target Start/End: Original strand, 17868364 - 17868916
Alignment:
| Q |
300 |
taatcagctaataatagaacaaagatcgtgtcaatcaactttatcaatggcatgaacttcacaaattaccttgttttttatttaattattgatcatattt |
399 |
Q |
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||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17868364 |
taatcagcttataataaaacaaagatcgtgttaatcaactttatcaatggcatgaacttcacaaattaccttgttttttatttaattattgatcatattt |
17868463 |
T |
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| Q |
400 |
aattagcataaatatttgtcaaaagtaatccgcttataataaaagaaagatcatgtgtaacttggaatcaatcttcttaaactaacttaaataattgaga |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17868464 |
aattagcataaatatttgtcaaaagtaatccgcttataataaaagaaagatcatgtttaacttggaatcaatcttcttaaactaacttaaataattgaga |
17868563 |
T |
|
| Q |
500 |
acattattacacaaatttaaactgcaaagcacacaaatatccatttatttgcatcacacataatttaagacacaatcttcaagacatcaccgacacatat |
599 |
Q |
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| T |
17868564 |
acattattacacaaatttaaactgcaaagtacacaaatatccatttatttgcatcacacataatttaagacataatcttcaagacatgaccgacacatat |
17868663 |
T |
|
| Q |
600 |
attcgatacaaacgaaggatcaagtgaaagaaatatgcatgcttatgctacatgccaaaatacaaaacatcacactagcttttattttacttatatgctc |
699 |
Q |
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||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
17868664 |
atttgatacaaacgaaggatcaagggaaagaaatatgcatgcttatgctacatgccaaaatac-aaacttcacactagcttttattttatctatatgctc |
17868762 |
T |
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| Q |
700 |
acatttatccataaaagccaaccccattgatccataattc-aatatctttatgacttatagaactaccttttcccccttgac-agatgaccatcaatgtc |
797 |
Q |
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| T |
17868763 |
acatttatccataaaagccaaccccattgaaccataattcaaatatctttatgacttatagaactaccttttcccccttgacaagatgaccatcaatatc |
17868862 |
T |
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| Q |
798 |
tctagtgcttttgctaaggtaatccatccaaccatttgggagtatcaatatcctc |
852 |
Q |
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| T |
17868863 |
tctagtgcttttgctaaggtaatccatccaaccattt-ggagtatcaatatcctc |
17868916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 497 - 845
Target Start/End: Original strand, 17851539 - 17851886
Alignment:
| Q |
497 |
agaacattattacacaaatttaaactgcaaagcacacaaatatccatttatttgcatcacacataatttaagacacaatcttcaagacatcaccgacaca |
596 |
Q |
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|||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||| ||| || | || |||||||||||||| |
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| T |
17851539 |
agaacattat-acacaaattttaacttcaaagcacacaaatatccatttatttgcattacacataatataaga-acactccttaaaacatcaccgacaca |
17851636 |
T |
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| Q |
597 |
tatattcgatacaaacgaaggatcaagtgaaagaaatatgcatgcttatgctacatgccaaaatacaaaacatcacactagcttttattttacttatatg |
696 |
Q |
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| T |
17851637 |
tttattcgatacaaacgaaggttcaagggaaacaaatatgcatgcttatgctacatgccattatac-aaacatcacactagcttttattttatttatatg |
17851735 |
T |
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| Q |
697 |
ctcacatttatccataaaagccaaccccattgatccataattcaatat---ctttatgacttatagaactaccttttcccccttgac-agatgaccatca |
792 |
Q |
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|||||||||||||||||||||||| |||||||| | |||| || |||| | || ||||||||||||| ||||| |||||||| |||||||||||| |
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| T |
17851736 |
ctcacatttatccataaaagccaa-cccattgaactataactccatattcaaatagtggcttatagaactacattttctcccttgacaagatgaccatca |
17851834 |
T |
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| Q |
793 |
atgtctctagtgcttttgctaaggtaatccatccaaccatttgggagtatcaa |
845 |
Q |
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| T |
17851835 |
atatctctagtgcttttgctaaggtagtccatccaaccattt-ggagtatcaa |
17851886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 28 - 307
Target Start/End: Original strand, 17868072 - 17868344
Alignment:
| Q |
28 |
attactagttataaatataaagattttattgctattcagcgatatttaatctctgtcgagaaatttgagaatatgtgaagaaaatagagtgagtcctttc |
127 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||| | ||| |
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| T |
17868072 |
attactagttataaatataaagattttattgctatttagcgatgtttaatctctgtctagaaatttgagaatatgtga-gaaaatagagtaagttccttc |
17868170 |
T |
|
| Q |
128 |
ctttcaaccaagttttttccatatacaaaagtcggcagtcgaacttgtgatcatttcttaagggattaagtcgtttgtcacttgggtcagtgatagtttt |
227 |
Q |
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||| ||| ||| |||||||||||||| | || ||||||||||||||||| | ||| |||||| || ||||||||||||||| |||||||||| |
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| T |
17868171 |
cttcgaac-------ttttcatatacaaaagtcagtggttgaacttgtgatcatttcgttaggaattaagccgcttgtcacttgggtcaatgatagtttt |
17868263 |
T |
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| Q |
228 |
tgtata-tcgaactttatcaatggcatgaactgcacaaattaccatattttttattcaattattgatcatatttaatcagc |
307 |
Q |
| |
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| | || ||||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17868264 |
tttgtaatcgaactttatcaatggcacgagcttcacaaattaccataatttttattcaattattgatcatatttaatcagc |
17868344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 488 - 852
Target Start/End: Original strand, 17817159 - 17817514
Alignment:
| Q |
488 |
aaataattgagaacattattacacaaatttaaactgcaaagcacacaaatatccatttatttgcatcacacataatttaagacacaatcttcaagacatc |
587 |
Q |
| |
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|||||| ||||| |||||| |||| ||||||||| |||||||||| |||||| ||||||||| |||||||||||| ||| | ||| || |||||||||| |
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| T |
17817159 |
aaataaatgagagcattat-acaccaatttaaacgtcaaagcacaccaatatctatttatttgaatcacacataatataaaatacactcctcaagacatc |
17817257 |
T |
|
| Q |
588 |
accgacacatatattcgatacaaacgaaggatcaagtgaaagaaatatgcatgcttatgctacatgccaaaatacaaaacatcacactagcttttatttt |
687 |
Q |
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|||||||| | |||| ||||||||||||||| |||||||| ||| | ||||| ||||| | |||| |||||||||||||||||||||||| |
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| T |
17817258 |
accgacacgtttatttgatacaaacgaaggaccaagtgaagcaaaca---------atgctgcatgcaattatac-aaacatcacactagcttttatttt |
17817347 |
T |
|
| Q |
688 |
acttatatgctcacatttatccataaaagccaaccccattgatccataattcaatat---ctttatgacttatagaactaccttttcccccttgac-aga |
783 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |||||||| | |||| || |||| | || ||||||||||||| ||||| |||||||| ||| |
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| T |
17817348 |
atttatatgctcacatttatccataaaagccaa-cccattgaactataactccatattcaaatagtggcttatagaactacattttctcccttgacaaga |
17817446 |
T |
|
| Q |
784 |
tgaccatcaatgtctctagtgcttttgctaaggtaatccatccaaccatttgggagtatcaatatcctc |
852 |
Q |
| |
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||||||||||| |||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
17817447 |
tgaccatcaatatctctagtgcatttgctaaggtagtccatccagcca-ttgggagtatcaatatcctc |
17817514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 496 - 694
Target Start/End: Original strand, 17842973 - 17843169
Alignment:
| Q |
496 |
gagaacattattacacaaatttaaactgcaaagcacacaaatatccatttatttgcatcacacataatttaagacacaatcttcaagacatcaccgacac |
595 |
Q |
| |
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||||||||||| |||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| ||||| ||| || |||||||||||||||||| |
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| T |
17842973 |
gagaacattat-acacaaattttaacttcaaaccacacaaatattcatttatttgcatcacacataatataagatacactcctcaagacatcaccgacac |
17843071 |
T |
|
| Q |
596 |
atatattcgatacaaacgaaggatcaagtgaaagaaatatgcatgcttatgctacatgccaaaatacaaaacatcacactagcttttattttacttata |
694 |
Q |
| |
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|| |||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||| ||||| |
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| T |
17843072 |
atttattcgatacaaacaaaggatcaagggaagcaaatatgcatgtttatgctacatgccattatac-aaacatcaaactagcttttattttatttata |
17843169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 336 - 451
Target Start/End: Original strand, 17868274 - 17868390
Alignment:
| Q |
336 |
aactttatcaatggcatgaacttcacaaattaccttgttttttatttaattattgatcatatttaattagca-taaatatttgtcaaaagtaatccgctt |
434 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| | |||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||| |
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| T |
17868274 |
aactttatcaatggcacgagcttcacaaattaccataatttttattcaattattgatcatatttaatcagcattaaatatttgtcaaaagtaatcagctt |
17868373 |
T |
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| Q |
435 |
ataataaaagaaagatc |
451 |
Q |
| |
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||||||||| ||||||| |
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| T |
17868374 |
ataataaaacaaagatc |
17868390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 690 - 852
Target Start/End: Original strand, 17843210 - 17843378
Alignment:
| Q |
690 |
ttatatgctcacatttatccataaaagccaacccc---attgatccataattcaatatct---ttatgacttatagaactaccttttcccccttgaca-g |
782 |
Q |
| |
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||||||||||||||||||||||||||| |||||| ||||| | |||| || |||| | | ||| |||||||| |||| ||||||||||||||| | |
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| T |
17843210 |
ttatatgctcacatttatccataaaagtcaacccattgattgaactataactccatatttaaataatggcttatagagctacattttcccccttgacaag |
17843309 |
T |
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| Q |
783 |
atgaccatcaatgtctctagtgcttttgctaaggtaatccatccaaccatttgggagtatcaatatcctc |
852 |
Q |
| |
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|||||||||||| |||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
17843310 |
atgaccatcaatatctctagtgcatttgctaaggtagtccatccagcca-ttgggagtatcaatatcctc |
17843378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 17868400 - 17868466
Alignment:
| Q |
237 |
aactttatcaatggcatgaactgcacaaattaccatattttttattcaattattgatcatatttaat |
303 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||||| |
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|
| T |
17868400 |
aactttatcaatggcatgaacttcacaaattaccttgttttttatttaattattgatcatatttaat |
17868466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 740 - 836
Target Start/End: Original strand, 17920534 - 17920634
Alignment:
| Q |
740 |
aatatctttatgacttatag---aactaccttttcccccttgaca-gatgaccatcaatgtctctagtgcttttgctaaggtaatccatccaaccatttg |
835 |
Q |
| |
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|||||||| ||||||||||| | |||| ||||||||||| ||| ||||||||||||| ||||| || | |||||||||||| |||||||| ||||||| |
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| T |
17920534 |
aatatcttcatgacttatagtccatctactttttcccccttaacaagatgaccatcaatatctctggtccctttgctaaggtagtccatccagccatttg |
17920633 |
T |
|
| Q |
836 |
g |
836 |
Q |
| |
|
| |
|
|
| T |
17920634 |
g |
17920634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 781 - 836
Target Start/End: Original strand, 17691605 - 17691660
Alignment:
| Q |
781 |
agatgaccatcaatgtctctagtgcttttgctaaggtaatccatccaaccatttgg |
836 |
Q |
| |
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|||||| |||||||||||| ||||| |||||||||||| |||||||||| |||||| |
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| T |
17691605 |
agatgagcatcaatgtctcgagtgcatttgctaaggtattccatccaactatttgg |
17691660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 517 - 612
Target Start/End: Original strand, 17920375 - 17920469
Alignment:
| Q |
517 |
taaactgcaaagcacacaaatatccatttatttgcatcacacataatttaagacacaatcttcaagacatcaccgacacatatattcgatacaaac |
612 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||||| ||| || ||||| | || |||||||||| | ||||| |||| |||||||| |
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| T |
17920375 |
taaactgcaaagcatacaaacatccatttatttgcatcacacacaatacaatacacact-tttaagacatcactgccacatttattgaatacaaac |
17920469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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