View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5462-Insertion-5 (Length: 795)
Name: NF5462-Insertion-5
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5462-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 343 - 787
Target Start/End: Complemental strand, 584859 - 584412
Alignment:
| Q |
343 |
caaaaccaaaatcaggaagaactagttcgctacttcatttatacatgtcaaacaatgatttcttatcatagctcatcatgatcatcatcatcaatttcca |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
584859 |
caaaaccaaaatcaggaagaactagttcgctacttcatttatacatgtcaaacaatgatttctaatcatagctcatcatgatcatcatcatcaatttcca |
584760 |
T |
|
| Q |
443 |
catgaccatctgcatgaactgtgttaaagaaagcaaattcatgatctagcatctcatcgagtgtcaattttctatcttcattatcatcagcctgcatcaa |
542 |
Q |
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| T |
584759 |
catgaccatctgcatgaactgtgttaaagaaagcaaattcatgatctagcatctcatcgagtgtcaattttctatcttcattatcatcagcctgcatcaa |
584660 |
T |
|
| Q |
543 |
atgcaatcaacaatctcacatatgcatataatctaaatttcctttctcttaattatgattctaaattgcaatttcaattgcaaagttgggaactttgata |
642 |
Q |
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| T |
584659 |
atacaatcaacaatctcacatatgcatataatctaaatttcctttctcttaattatgattctaaattgcaattgtaattgcaaagttgggaactttgata |
584560 |
T |
|
| Q |
643 |
tagtagcaaagtatacacaaactaatccggattgtctgaggttgatgatctcccgcactcacaaagtcggcatatcggtggtcattgtatcgagatc-ac |
741 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| || |
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| T |
584559 |
tagtagcaaagtatacacaaactaatcctgattgtctgaggttgatgatctcccgcactcacaaagtcggcatattggcggtcattgtatcgagatcaac |
584460 |
T |
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| Q |
742 |
atccataattgga-tttgaccttc-taaactaaaatacgaagtttaaa |
787 |
Q |
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| T |
584459 |
atccataattggattttgactttcttaaactaaaatacgaagtttaaa |
584412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 585190 - 584885
Alignment:
| Q |
13 |
atagtagaaaatatatttgttattttggttttgtataaacaaattcaatacccytgatcttgaaaagttgattgttcttgtaagtttacgtgttaaatta |
112 |
Q |
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| T |
585190 |
atagtagaaaatatatttgttattttggttttgtataaacaaattcaatacccttgatcttgaaaagttgattgttcttgtaagtttacgtgttaaatta |
585091 |
T |
|
| Q |
113 |
gctaattatctcttatatttccaacatgttattttttctgcttatacttttgtaactcactagataatgacattgtg-caatatatgtctaaagaatatt |
211 |
Q |
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| T |
585090 |
gctaattatctcttatatctccaacatgttattttctctgcttatacttttgtaactcgctagataatgacattctgccaatatatgtctaaagaatatt |
584991 |
T |
|
| Q |
212 |
tacttataagacatcttacccaaaagaccaacttaaaatgttaattatgcatacatcaagttaataagaaaggccaaaaatatttcaaattgaatttgtt |
311 |
Q |
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| T |
584990 |
tacttataagacatcttaccc-aaagaccaacttaaaatgttaattatgcatacatcaagttaataagaaaggccaaaaatatttcaatttgaatttgtt |
584892 |
T |
|
| Q |
312 |
tgtattc |
318 |
Q |
| |
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||||||| |
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| T |
584891 |
tgtattc |
584885 |
T |
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