View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5462-Insertion-8 (Length: 220)
Name: NF5462-Insertion-8
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5462-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 16393565 - 16393353
Alignment:
| Q |
8 |
ataagcatatggattataatattgcagttagacatgtgtatatatgaaagtaatgacataaaactaatttgaaaagaaacttaaggcataccacagcttc |
107 |
Q |
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| T |
16393565 |
ataagcatatggattataataatgcagttagacatgtgtatatatgaaagtaatgacataaaactaatttgaaaagaaacttatggcataccacagcttc |
16393466 |
T |
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| Q |
108 |
ggagaatttagaactgaccaacttagccaaaacatctccttgtctatagcaaacgacagatattgtttttcattttggctgccatttgatcttaaaagcc |
207 |
Q |
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| T |
16393465 |
ggggaatttagaactgaccaacttagccaaaacatctccttgtctatagcaaacgacagatattgttttacattttggctgccatttgatcttaaaagcc |
16393366 |
T |
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| Q |
208 |
atagtcttcccac |
220 |
Q |
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||||||||||||| |
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| T |
16393365 |
atagtcttcccac |
16393353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 19766243 - 19766035
Alignment:
| Q |
11 |
agcatatggattataatattgcagttagacatgtgtatatatgaaagtaatgacataaaactaatttgaaaagaaacttaaggcataccacagcttcgga |
110 |
Q |
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|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19766243 |
agcatatggattataataatacagttagaaatgtgtatatatgaaagtaatgacataaaactaatttgaaaagaaacttaaggcataccacagcttcggg |
19766144 |
T |
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| Q |
111 |
gaatttagaactgaccaacttagccaaaacatctccttgtctatagcaaacgacagatattgtttttcattttggctgccatttgatcttaaaagccata |
210 |
Q |
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| T |
19766143 |
gaatttagaactgaccaacttagccaaaacatttccttctctatagcaaacgacagatattg-ttttcattttgactgccatttgatcttaaaagccata |
19766045 |
T |
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| Q |
211 |
gtcttcccac |
220 |
Q |
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|||||||||| |
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| T |
19766044 |
gtcttcccac |
19766035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 14557615 - 14557407
Alignment:
| Q |
11 |
agcatatggattataatattgcagttagacatgtgtatatatgaaagtaatgacataaaactaatttgaaaagaaacttaaggcataccacagcttcgga |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14557615 |
agcatatggattataataatgcagttagacatgtgtatctatgaaagtaatgacataaaactaatttgaaaagaaacttaaggcataccacagcttcggg |
14557516 |
T |
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| Q |
111 |
gaatttagaactgaccaacttagccaaaacatctccttgtctatagcaaacgacagatattgtttttcattttggctgccatttgatcttaaaagccata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |
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| T |
14557515 |
gaatttagaactgaccaacttagccaaaacatctccttctctacagcaaacgacagatatt-ttttccattttagctgccatttgatcttaaaagccata |
14557417 |
T |
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| Q |
211 |
gtcttcccac |
220 |
Q |
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||||| |||| |
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| T |
14557416 |
gtctttccac |
14557407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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