View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5462-Insertion-9 (Length: 142)
Name: NF5462-Insertion-9
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5462-Insertion-9 |
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| [»] chr3 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 5e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 3804704 - 3804570
Alignment:
| Q |
8 |
gcaatagctttaatgatagaattacattaattgtaggcagctagaatgtaaggtaggagtagtttggtacagggatatttttggaatatcaactagtatt |
107 |
Q |
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| T |
3804704 |
gcaatagctttaatgatagaattacattaattgtaggcagctggaatgtaaggtagaagtagtttagtccaaggatatttttgaaatatcaactagtatt |
3804605 |
T |
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| Q |
108 |
ttaaaattattaatagaaaagatacctttccttgg |
142 |
Q |
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| T |
3804604 |
ttaaaattattaatagaaaagatacctttctttgg |
3804570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 27149841 - 27149974
Alignment:
| Q |
9 |
caatagctttaatgatagaattacattaattgtaggcagctagaatgtaaggtaggagtagtttggtacagggatatttttggaatatcaactagtattt |
108 |
Q |
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| T |
27149841 |
caatagctttaatgatagaattacattaattgtaggcagctgtaatgtaaggtaggagtagtttagtccaaggatatttttggaatatcaactagtattt |
27149940 |
T |
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| Q |
109 |
taaaattattaatagaaaagatacctttccttgg |
142 |
Q |
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| T |
27149941 |
taaaattattaatagaaaaaatgcctttccttgg |
27149974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 8435313 - 8435441
Alignment:
| Q |
9 |
caatagctttaatgatagaattacattaattgtaggcagctagaatgtaaggtaggagtagtttggtacagggatatttttggaatatcaactagtattt |
108 |
Q |
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| T |
8435313 |
caatagctttaatgatagaattacattaattgtaggcagctgtaatgtaaggtaggagtagtttagtccaaggatatttttggaatatcaactagtattt |
8435412 |
T |
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| Q |
109 |
taaaattattaatagaaaagatacctttc |
137 |
Q |
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| T |
8435413 |
taaaattattaatagaaaaaatacatttc |
8435441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 5165251 - 5165376
Alignment:
| Q |
9 |
caatagctttaatgatagaattacattaattgtaggcagctagaatgtaaggtaggagtagtttggtacagggatatttttggaatatcaactagtattt |
108 |
Q |
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| T |
5165251 |
caatagctttaatgatagaattacattaattgtaggcag--------taaggtaggagtagtttagtccaaggatatttttggaatatcaactagtattt |
5165342 |
T |
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| Q |
109 |
taaaattattaatagaaaagatacctttccttgg |
142 |
Q |
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| T |
5165343 |
taaaattattaatagaaaaaatacatttccttgg |
5165376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 31742733 - 31742858
Alignment:
| Q |
9 |
caatagctttaatgatagaattacattaattgtaggcagctagaatgtaaggtaggagtagtttggtacagggatatttttggaatatcaactagtattt |
108 |
Q |
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| T |
31742733 |
caatagctttaatgatagaattacattaattgtaggcgg--------taaggaaggagtagtttagtccaaggatatttttggaatatcaactagtattt |
31742824 |
T |
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| Q |
109 |
taaaattattaatagaaaagatacctttccttgg |
142 |
Q |
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| T |
31742825 |
taaaattattaatagaaaaaatacattttcttgg |
31742858 |
T |
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