View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5462_high_5 (Length: 368)
Name: NF5462_high_5
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5462_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 145 - 353
Target Start/End: Complemental strand, 5985278 - 5985070
Alignment:
| Q |
145 |
taagggaaagataagtatattagaactctgataccattacaaacaataaaagtaaaaccatactataaagaaaaattcattacagaactaaatgaatttt |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5985278 |
taagggaaagataagtatattagaactctgataccattacaaaaaataaaagtaaaaccatactataaagaaaaattcattacagaactaaatgaatttt |
5985179 |
T |
|
| Q |
245 |
gtgaccaaactcacctcagagtgattgcagctggaaaaacgaatcctacacaaacagcacctgttgctccagtcaactggaaaataacccaaatgttcgg |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5985178 |
gtgaccaaactcacctcagagtgattgcagctggaaaaacgaatcctacacaaacagcacctgttgctccagtgaactggaaaataacccaaatgttcgg |
5985079 |
T |
|
| Q |
345 |
tatgaaatt |
353 |
Q |
| |
|
||||||||| |
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|
| T |
5985078 |
tatgaaatt |
5985070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 224 - 353
Target Start/End: Complemental strand, 5969190 - 5969061
Alignment:
| Q |
224 |
ttacagaactaaatgaattttgtgaccaaactcacctcagagtgattgcagctggaaaaacgaatcctacacaaacagcacctgttgctccagtcaactg |
323 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | |||| ||| ||| |||||||||||||||||||| ||||| |
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| T |
5969190 |
ttacagaactaaatgaattcagtgaccaaactcacctcagagcgattgcagctggaaatatgaatgctatacagacagcacctgttgctccagtgaactg |
5969091 |
T |
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| Q |
324 |
gaaaataacccaaatgttcggtatgaaatt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
5969090 |
gaaaataacccaaatgttcggtatgaaatt |
5969061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 224 - 353
Target Start/End: Original strand, 8714957 - 8715086
Alignment:
| Q |
224 |
ttacagaactaaatgaattttgtgaccaaactcacctcagagtgattgcagctggaaaaacgaatcctacacaaacagcacctgttgctccagtcaactg |
323 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | |||| ||| ||| |||||||||||||||||||| ||||| |
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| T |
8714957 |
ttacagaactaaatgaattcagtgaccaaactcacctcagagcgattgcagctggaaatatgaatgctatacagacagcacctgttgctccagtgaactg |
8715056 |
T |
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| Q |
324 |
gaaaataacccaaatgttcggtatgaaatt |
353 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
8715057 |
gaaaataacccaaatgttcggtatgaaatt |
8715086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5985394 - 5985293
Alignment:
| Q |
1 |
catagggacagccaaaatcttgtcgattttagttgctatgttgtatcgatccctgacggaaaagaaaatgcttaattaataattattttttcgttaatta |
100 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5985394 |
cataaggacagccaaaatcttgtcggttttagttgctatgttgtatcgatccctgacggaaaagaaaatgcttaattaataattattttttcgttagtta |
5985295 |
T |
|
| Q |
101 |
at |
102 |
Q |
| |
|
|| |
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|
| T |
5985294 |
at |
5985293 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 215 - 353
Target Start/End: Complemental strand, 5964066 - 5963928
Alignment:
| Q |
215 |
aaaaattcattacagaactaaatgaattttgtgaccaaactcacctcagagtgattgcagctggaaaaacgaatcctacacaaacagcacctgttgctcc |
314 |
Q |
| |
|
|||||| |||||||||||||||||| || ||||||| |||||||||| |||||||||||||||||| | |||| ||| ||||||||||||||||||||| |
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| T |
5964066 |
aaaaatccattacagaactaaatgagttcagtgaccagactcacctcaaagtgattgcagctggaaatatgaatgctatacaaacagcacctgttgctcc |
5963967 |
T |
|
| Q |
315 |
agtcaactggaaaataacccaaatgttcggtatgaaatt |
353 |
Q |
| |
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|| ||||||||||||||||||||| | ||||||||||| |
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| T |
5963966 |
agagaactggaaaataacccaaatgctaggtatgaaatt |
5963928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 339
Target Start/End: Complemental strand, 5935678 - 5935545
Alignment:
| Q |
206 |
actataaagaaaaattcattacagaactaaatgaattttgtgaccaaactcacctcagagtgattgcagctggaaaaacgaatcctacacaaacagcacc |
305 |
Q |
| |
|
||||||||| ||||| ||||| | || ||||||||| |||| |||||| || |||||||||||||||||||||| | |||||||| |||||||||| | |
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| T |
5935678 |
actataaagcaaaatccattataaaatgaaatgaattgagtgatcaaacttacttcagagtgattgcagctggaaatatgaatcctaaacaaacagcagc |
5935579 |
T |
|
| Q |
306 |
tgttgctccagtcaactggaaaataacccaaatg |
339 |
Q |
| |
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||||||||||| |||||||||| | |||||||| |
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| T |
5935578 |
agttgctccagtgaactggaaaagatcccaaatg |
5935545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5965085 - 5965010
Alignment:
| Q |
1 |
catagggacagccaaaatcttgtcgattttagttgctatgttgtatcgatccctgacggaaaagaaaatgcttaat |
76 |
Q |
| |
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|||| |||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5965085 |
cataaggacagacataatcttgtcttttttagttgctatgttgtatcgatccctgtaggaaaagaaaatgcttaat |
5965010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 5969267 - 5969218
Alignment:
| Q |
27 |
ttttagttgctatgttgtatcgatccctgacggaaaagaaaatgcttaat |
76 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5969267 |
ttttagttgctatgttgtatcgatccctacaggaaaagaaaatgcttaat |
5969218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 8714880 - 8714929
Alignment:
| Q |
27 |
ttttagttgctatgttgtatcgatccctgacggaaaagaaaatgcttaat |
76 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
8714880 |
ttttagttgctatgttgtatcgatccctacaggaaaagaaaatgcttaat |
8714929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 5935890 - 5935829
Alignment:
| Q |
13 |
caaaatcttgtcgattttagttgctatgttgtatcgatccctgacggaaaagaaaatgctta |
74 |
Q |
| |
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|||||||||||| |||| ||||||||||||| |||||||||| |||||||||| ||||| |
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|
| T |
5935890 |
caaaatcttgtccgttttggttgctatgttgtgtcgatccctgtaagaaaagaaaaggctta |
5935829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 5627864 - 5627955
Alignment:
| Q |
262 |
agagtgattgcagctggaaaaacgaatcctacacaaacagcacctgttgctccagtcaactggaaaataacccaaatgttcggtatgaaatt |
353 |
Q |
| |
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|||||||| ||||||||||| | |||||||| ||| || || | ||||||||||| ||||||||| | |||||||| | ||||||||||| |
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| T |
5627864 |
agagtgatggcagctggaaagatgaatcctatacagaccgcggcggttgctccagtgaactggaaagcatcccaaatgctaggtatgaaatt |
5627955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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