View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5462_high_7 (Length: 279)
Name: NF5462_high_7
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5462_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 34860047 - 34859815
Alignment:
| Q |
1 |
tctattgtctcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacggagttcatacgtaggaagctagatgtttttgaagatcct |
100 |
Q |
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| T |
34860047 |
tctattgtcgcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacggagttcatacgtaggaagctagatgtttttgaagatcct |
34859948 |
T |
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| Q |
101 |
tattgctcgtcttctgtgtttcttctttaatttacaaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagggtttttgtga |
200 |
Q |
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| T |
34859947 |
tattgctcgtcttctgtgtttcttctttaatttacaaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagggtttttgtga |
34859848 |
T |
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| Q |
201 |
tactatctatctatgcaatggttatcagtatgt |
233 |
Q |
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| T |
34859847 |
tactatctatctatgcaatggttatcaatatgt |
34859815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 34859795 - 34859743
Alignment:
| Q |
210 |
tctatgcaatggttatcagtatgttaagacgagttgaagattaaagccaatcc |
262 |
Q |
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| T |
34859795 |
tctatgaaatggttatcagtatgttaagacgagttgaagattaaagccaatcc |
34859743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 23133073 - 23132979
Alignment:
| Q |
115 |
tgtgtttcttctttaatttac---aaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagggtttttgtgatactat |
206 |
Q |
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| T |
23133073 |
tgtgtttcttgtttattttaccgaaaagtcgtgcaaaagtagaagatggaagctacttcaattacacaattgttgaagggcttttgtgatactat |
23132979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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