View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5462_high_8 (Length: 269)
Name: NF5462_high_8
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5462_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 16393561 - 16393801
Alignment:
| Q |
19 |
cttatatcaacaactattgagacacttaccacatcataaatgttgttgtctaattcacgagatcgacgacttacatgctgagtcagctgatgatgttgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16393561 |
cttatatcaacaactattgagacacttaccacatcataaatgttgttgtctaattcacgagatcgacgacttacatgctgagtcagctgatgatgttgaa |
16393660 |
T |
|
| Q |
119 |
aacactcctgacggtcttaccgttacggaagaggttacgatgtctgttgtaagtattgattagttgtgaagttgatataatcagaatattgattcatact |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16393661 |
aacactcctgacggtcttaccgttacggaagaggtcacgatgtctgttgtaagtattgattagttgtgaagttgatataatcagaatattgattcatgct |
16393760 |
T |
|
| Q |
219 |
atttaaaatataaatatttaagacatggttttttacctttg |
259 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16393761 |
atttaaaatataaatatttaagacgtggttttttacctttg |
16393801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 19766245 - 19766482
Alignment:
| Q |
22 |
atatcaacaactattgagacacttaccacatcataaatgttgttgtctaattcacgagatcgacgacttacatgctgagtcagctgatgatgttgaaaac |
121 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19766245 |
atattaacaactgttgagacccttaccacatcataaatgttgttgtctaattcacgagatcaacgacttacatgctgagtcaggtgatgatgttgaaaac |
19766344 |
T |
|
| Q |
122 |
actcctgacggtcttaccgttacggaagaggttacgatgtctgttgtaagtattgattagttgtgaagttgatataatcagaatattgattcatactatt |
221 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19766345 |
actcctgacagtcttaccgttacggaagaggtcaccatgtttgttgtaagtattgattcgttgtgaagttgatataatgagaatattgattcatactatt |
19766444 |
T |
|
| Q |
222 |
taaaatataaatatttaagacatggttttttacctttg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19766445 |
taaaatataaatatttaagacatggttttttacctttg |
19766482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 14557617 - 14557854
Alignment:
| Q |
22 |
atatcaacaactattgagacacttaccacatcataaatgttgttgtctaattcacgagatcgacgacttacatgctgagtcagctgatgatgttgaaaac |
121 |
Q |
| |
|
|||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14557617 |
atattaacaactattgagacccttgccacatcataaatgttgttgtctaattcacgagatcaacgacttacatgctgagtcagccgatgatgttgaaaac |
14557716 |
T |
|
| Q |
122 |
actcctgacggtcttaccgttacggaagaggttacgatgtctgttgtaagtattgattagttgtgaagttgatataatcagaatattgattcatactatt |
221 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
14557717 |
acttctgacagtcttaccgttacggaagaggtcaccatgtctgttgtaagtattgattagttgtaaagttgatataatgaaaatattgattcatactatt |
14557816 |
T |
|
| Q |
222 |
taaaatataaatatttaagacatggttttttacctttg |
259 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14557817 |
taaaatataaatatttaagacatggtattttacctttg |
14557854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University