View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5462_low_1 (Length: 1082)

Name: NF5462_low_1
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5462_low_1
NF5462_low_1
[»] chr3 (11 HSPs)
chr3 (800-1066)||(3809460-3809726)
chr3 (538-797)||(3809152-3809412)
chr3 (212-458)||(3804895-3805141)
chr3 (212-389)||(5164866-5165043)
chr3 (18-147)||(3804700-3804829)
chr3 (212-331)||(8435037-8435156)
chr3 (103-147)||(5165109-5165153)
chr3 (18-77)||(27149785-27149844)
chr3 (114-147)||(8435222-8435255)
chr3 (826-861)||(3809421-3809456)
chr3 (18-77)||(8435257-8435316)
[»] chr6 (2 HSPs)
chr6 (212-389)||(31742347-31742524)
chr6 (18-147)||(31742590-31742736)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 800 - 1066
Target Start/End: Original strand, 3809460 - 3809726
Alignment:
Q  800 atagaaaggccatatctcatttgttgttgagcttgagcgacggacatggaaaactacacagtccaggggtaatatcacgagtagctttactatacgatgt 899  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  3809460 atagaaaggccatatctcatttgttgttgagcttgagcgacggacatggaaaactacacagtccaggggtaatatcccgagcagctttactatacgatgt 3809559  T
Q  900 tcatagaagtatcatttttcgtatatggaaacaagtaatggagactggtaatgcttatcataagaaaacacgctgtggaaggaaacgtgttcagttagat 999  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||    
T  3809560 tcatagaagtatcatttatcgtatatggaaacaagtaatggagactggtaatgcttatcataagaaaaaacgatgtggaaggaaatgtgttcagttagat 3809659  T
Q  1000 ttggagttaatgcgtcaagttccattgtcaaaacgatctacctttcgatctctatctcttgctctga 1066  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3809660 ttggagttaatgcgtcaagttccattgtcaaaacgatctacctttcgatctctatctcttgctctga 3809726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-115
Query Start/End: Original strand, 538 - 797
Target Start/End: Original strand, 3809152 - 3809412
Alignment:
Q  538 atttgcttgaatgacacattatgcataaagttgaagatgatcagtatgtgccattccctgaagcaaatgactttcaacaattccatatagctacaggtac 637  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3809152 atttgcttgaatgacacat-atgcataaagttgaagatgatcagtatgtgccattccctaaagcaaatgactttcaacaattccatatagctacatgtac 3809250  T
Q  638 atgtttaaagtagaatgacacatattcttcccttttttgtgccctgttatttttagttgat--atatcaattgaatttcgata-ttttttccctttaatc 734  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  |||||||||||||||||||| |||||||||| |||||    
T  3809251 atgtttaaagtagaatgacacatattcttcccttttttgtg-cttgttatttttagttgataaatatcaattgaatttcgatatttttttccctataatc 3809349  T
Q  735 ttgtcatgcagactcgttgacaactgaaggaacttccaaaaaacgtcgttttctgaagaatga 797  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3809350 ttgtcatgcagactcgttgacaactgaaggaacttccaaaaaacgtcgttttctgaagaatga 3809412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 212 - 458
Target Start/End: Original strand, 3804895 - 3805141
Alignment:
Q  212 agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatgaactttcagccatagttaaaaatgcctcttaacatagatttg 311  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3804895 agagtagaaatgaagtttaaacatctagtcattctctatataaaaagagctttgtatgaactttcagccatagttaaaaatgcctcttaacatagacttg 3804994  T
Q  312 aatgttcctttcacttttacggatgaacattcaatttctgataatgataccacaataccatcaaatgtagaaacacaataccagaacagctcgcttgaag 411  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    || |||||||    
T  3804995 aatgtttctttcacttttacgcatgaacattcaatttctgataatgataccacaataccatcaaatgtagaaacacagtaccagaatttttctcttgaag 3805094  T
Q  412 atgaaacaaacagcaccgattctcgctcaaatgaaaatggtgtgtaa 458  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  3805095 atgaaacaaacagcaccgattcttgctcaaatgaaaatggtgtgtaa 3805141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 212 - 389
Target Start/End: Complemental strand, 5165043 - 5164866
Alignment:
Q  212 agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatgaactttcagccatagttaaaaatgcctcttaacatagatttg 311  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  5165043 agagtagaaatgaagtttaaacatcccgtcattctctatataaagagagctttgtatgaactttcagccatacttaaaaatgcctcttaacatagacttg 5164944  T
Q  312 aatgttcctttcacttttacggatgaacattcaatttctgataatgataccacaataccatcaaatgtagaaacacaa 389  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5164943 aatgttcctttcacttttacacatgaacattcaatttctgataatgataccacaataccatcaaatgtagaaacacaa 5164866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 3804700 - 3804829
Alignment:
Q  18 attgcatgagttccaatccaagcatcacaaacacgtctctccctcttcacaagaatacataggttttattgtggctattgatattctcatttggatttca 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3804700 attgcatgagttccaatccaagcctcacaaacacgtctctccctcttcacaagaatacataggttttattgtggctattgatattctcatttggatttca 3804799  T
Q  118 aattgaaaaaagtaggcaaactcccaccac 147  Q
    ||||||||||||||||||||||||||||||    
T  3804800 aattgaaaaaagtaggcaaactcccaccac 3804829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 8435156 - 8435037
Alignment:
Q  212 agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatgaactttcagccatagttaaaaatgcctcttaacatagatttg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | | ||||||||||| |||    
T  8435156 agagtagaaatgaagtttaaacatccagtcattctctatataaagagagctttgtatgaactttcagccatacttaaaaacgtcccttaacatagacttg 8435057  T
Q  312 aatgttcctttcacttttac 331  Q
    ||||||||||||||||||||    
T  8435056 aatgttcctttcacttttac 8435037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 5165153 - 5165109
Alignment:
Q  103 ctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5165153 ctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac 5165109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 27149844 - 27149785
Alignment:
Q  18 attgcatgagttccaatccaagcatcacaaacacgtctctccctcttcacaagaatacat 77  Q
    |||| |||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||    
T  27149844 attgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacat 27149785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 8435255 - 8435222
Alignment:
Q  114 ttcaaattgaaaaaagtaggcaaactcccaccac 147  Q
    ||||||||||||||||||||||||||||||||||    
T  8435255 ttcaaattgaaaaaagtaggcaaactcccaccac 8435222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 826 - 861
Target Start/End: Original strand, 3809421 - 3809456
Alignment:
Q  826 ttgagcttgagcgacggacatggaaaactacacagt 861  Q
    |||||||||||||| |||||||||||||||||||||    
T  3809421 ttgagcttgagcgatggacatggaaaactacacagt 3809456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 8435316 - 8435257
Alignment:
Q  18 attgcatgagttccaatccaagcatcacaaacacgtctctccctcttcacaagaatacat 77  Q
    |||| |||||| ||||| ||||| ||||||||| |  |||||||||||||||||||||||    
T  8435316 attgtatgagtaccaattcaagcctcacaaacatgcttctccctcttcacaagaatacat 8435257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 1e-78; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 212 - 389
Target Start/End: Complemental strand, 31742524 - 31742347
Alignment:
Q  212 agagtagaaatgaagtttaaacatccagtcattctctatataaaaagagctttgtatgaactttcagccatagttaaaaatgcctcttaacatagatttg 311  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  31742524 agagtagaaatgaagtttaaccatccagtcattctctatataaagagagctttgtatgaactttcagccatacttaaaaatgcctcttaacatagacttg 31742425  T
Q  312 aatgttcctttcacttttacggatgaacattcaatttctgataatgataccacaataccatcaaatgtagaaacacaa 389  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31742424 aatgttcctttcacttttacacatgaacattcaatttctgataatgatacaacaataccatcaaatgtagaaacacaa 31742347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 31742736 - 31742590
Alignment:
Q  18 attgcatgagttccaatccaagcatcacaaacacgtctctccctcttcacaagaatacataggttttat----------tgtggctattgatatt----- 102  Q
    |||| |||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||          ||||||||||||||||         
T  31742736 attgtatgagtaccaattcaagcctcacaaacacgcctctccctcttcacaagaatacatcggttttattatggtttaatgtggctattgatattctcac 31742637  T
Q  103 --ctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac 147  Q
      |||||||||||||||||||||||||||||||||||||||||||||    
T  31742636 agctcatttggatttcaaattgaaaaaagtaggcaaactcccaccac 31742590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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