View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5462_low_11 (Length: 248)
Name: NF5462_low_11
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5462_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 38441416 - 38441189
Alignment:
| Q |
1 |
aatattgaaaggtagaagactgcatataaactactcgaatctatcatcattaatcatgtccacatgcatatatactttatataaatttaaggaaaatgat |
100 |
Q |
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| T |
38441416 |
aatattgaaaggtagaacactgcatataaactactcaaatctatcatcattaatcatgtccacatgcata----ctttatataaatgtaaggaaaatcat |
38441321 |
T |
|
| Q |
101 |
tacaagcccaatcaaaaggattctgaccgtatgaattcctccttgaagcatggttccaccactatagatttctataggaaacaagcaagttccatttgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38441320 |
tacaagcccaatcaaaaggattctgaccgtatgaattcctccttgaagcatggttccaccactatagatttctataggaaacaagcaagttccatttgac |
38441221 |
T |
|
| Q |
201 |
gggtcttgtgttacaatagtggcagttccatc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38441220 |
gggtcttgtgttacaatagtggcagttccatc |
38441189 |
T |
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