View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5462_low_2 (Length: 579)

Name: NF5462_low_2
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5462_low_2
NF5462_low_2
[»] chr6 (6 HSPs)
chr6 (250-464)||(11609333-11609547)
chr6 (284-447)||(20916349-20916512)
chr6 (125-232)||(11609759-11609867)
chr6 (313-447)||(20926313-20926447)
chr6 (370-447)||(20916791-20916868)
chr6 (301-422)||(26903563-26903684)
[»] chr3 (8 HSPs)
chr3 (254-491)||(44491117-44491354)
chr3 (123-251)||(44490758-44490885)
chr3 (331-567)||(54565394-54565631)
chr3 (301-422)||(6010005-6010126)
chr3 (301-422)||(17782893-17783014)
chr3 (301-422)||(19091520-19091641)
chr3 (301-422)||(8562048-8562169)
chr3 (405-455)||(12530143-12530193)
[»] chr4 (4 HSPs)
chr4 (276-432)||(42329338-42329494)
chr4 (141-248)||(42328962-42329070)
chr4 (319-467)||(6612710-6612858)
chr4 (298-467)||(27015039-27015208)
[»] scaffold0123 (1 HSPs)
scaffold0123 (250-382)||(31885-32016)
[»] chr5 (2 HSPs)
chr5 (299-477)||(22790018-22790196)
chr5 (301-419)||(22288426-22288544)
[»] chr1 (2 HSPs)
chr1 (301-447)||(41327550-41327696)
chr1 (344-447)||(41337824-41337927)
[»] chr8 (4 HSPs)
chr8 (311-465)||(29383116-29383269)
chr8 (311-422)||(15994389-15994500)
chr8 (301-419)||(14501770-14501888)
chr8 (301-422)||(22184913-22185034)
[»] scaffold0252 (1 HSPs)
scaffold0252 (301-422)||(3951-4072)
[»] scaffold0381 (1 HSPs)
scaffold0381 (298-467)||(4575-4744)
[»] chr2 (1 HSPs)
chr2 (285-422)||(45009939-45010075)
[»] chr7 (3 HSPs)
chr7 (293-464)||(8866163-8866331)
chr7 (301-422)||(3208981-3209102)
chr7 (409-464)||(9496251-9496306)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 5e-70; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 250 - 464
Target Start/End: Complemental strand, 11609547 - 11609333
Alignment:
Q  250 gggattgatcatgaagaagattaggtgtcgaggaaaatgagcctgataagttggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagt 349  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  11609547 gggattgatcatgaagacgattaggtgtcgaggaaaatgagcctgataagttggaattgcaggggtttgggtagcccgaatgcaattccagatttaaagt 11609448  T
Q  350 acctagttcggcacttcaatccggacctcttattcttaagcgagacactagtctcccgaaataaaattgaagatttacgttatttgctcggctttgattt 449  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||| |||||  ||| || ||||||||||| ||| ||||| | || || ||||| |     
T  11609447 acctagttcggcaattcaatccggacctcttatttttaagagagacattagtccaccgtaaaaaaattgaagaattatgttatgttcttggttttgactc 11609348  T
Q  450 ttgtttttctgttga 464  Q
     ||||||||||||||    
T  11609347 atgtttttctgttga 11609333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 284 - 447
Target Start/End: Original strand, 20916349 - 20916512
Alignment:
Q  284 aaatgagcctgataagttggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttatt 383  Q
    ||||||| || ||| | ||||||||| |||||||||||||| |||  |||||||  ||  ||||  |||||||||  | |||||| ||||||||| | ||    
T  20916349 aaatgagtcttatagggtggaattgccggggtttaggtagctcgagcgcaattcccgacctaaaacacctagttctacccttcaacccggacctcctctt 20916448  T
Q  384 cttaagcgagacactagtctcccgaaataaaattgaagatttacgttatttgctcggctttgat 447  Q
    |||||| |||| | |||||  ||||||||||||||||||||||||||| ||||| || ||||||    
T  20916449 cttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 20916512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 232
Target Start/End: Complemental strand, 11609867 - 11609759
Alignment:
Q  125 ttgtgagagcttgttgttct-ctcctacggttttgatgccgccacccaattgtgagagcttgttgttcgatcggattgtttctcaaccttgatcgttg-t 222  Q
    |||||||||||||||||| | |||||| |||||   ||||||||| |||||||||||||||||||||||||| ||||| |||||||  |||||||||| |    
T  11609867 ttgtgagagcttgttgtttttctcctagggtttctctgccgccacgcaattgtgagagcttgttgttcgatcagattgcttctcaa-tttgatcgttgtt 11609769  T
Q  223 tctatttgtt 232  Q
    ||||||||||    
T  11609768 tctatttgtt 11609759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 447
Target Start/End: Original strand, 20926313 - 20926447
Alignment:
Q  313 ggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactagtctcccgaaata 412  Q
    |||||||||||| |||  |||||||  ||  |||| ||| ||| ||| ||||||||||| |||||| | |||||||| |||| | |||||  ||||||||    
T  20926313 ggtttaggtagctcgagcgcaattcctgacctaaaatacttagctcgacacttcaatccagacctcctcttcttaagtgagatattagtccaccgaaata 20926412  T
Q  413 aaattgaagatttacgttatttgctcggctttgat 447  Q
    |||||||||||| |||||||||||| || ||||||    
T  20926413 aaattgaagattgacgttatttgcttggttttgat 20926447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 20916791 - 20916868
Alignment:
Q  370 ccggacctcttattcttaagcgagacactagtctcccgaaataaaattgaagatttacgttatttgctcggctttgat 447  Q
    ||||||||| | |||||||| |||| | |||||  ||||||||||||||||||||||||||| ||||| || ||||||    
T  20916791 ccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 20916868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 26903563 - 26903684
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    ||||||||  ||||| |||||||||||| | | ||||  ||  | ||||||||||| ||||||||||||||||| || |||||  |||| ||||| ||||    
T  26903563 tggaattgtcggggtgtaggtagcccgagtactattcccgaccttaagtacctagtccggcacttcaatccggatcttttatttctaagtgagactctag 26903662  T
Q  401 tctc-ccgaaataaaattgaaga 422  Q
     ||| ||| ||||||||||||||    
T  26903663 -ctcaccgtaataaaattgaaga 26903684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 254 - 491
Target Start/End: Original strand, 44491117 - 44491354
Alignment:
Q  254 ttgatcatgaagaagattaggtgtcgaggaaaatgagcctgataagttggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacct 353  Q
    ||||| ||||||| |||||| |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  44491117 ttgattatgaagatgattagttgtcgaggaaaatgagtctaataagttggaattgcaggggtttgggtagcccgaatgcaattccagatttaaagtacct 44491216  T
Q  354 agttcggcacttcaatccggacctcttattcttaagcgagacactagtctcccgaaataaaattgaagatttacgttatttgctcggctttgatttttgt 453  Q
    ||||||| |||||||||||||||| ||||| ||||  ||||| ||||||  |||||||||||||||||| |||||||| ||||| ||||||||||||||     
T  44491217 agttcggtacttcaatccggaccttttatttttaactgagacgctagtccaccgaaataaaattgaagaattacgttacttgcttggctttgatttttgc 44491316  T
Q  454 ttttctgttgattgtagtggtagacgaggaggtcttgc 491  Q
    |||||| ||||| | | ||||||| | ||||| |||||    
T  44491317 ttttcttttgatcgaattggtagaggcggaggccttgc 44491354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 123 - 251
Target Start/End: Original strand, 44490758 - 44490885
Alignment:
Q  123 gattgtgagagcttgttgttctctcctacggttttgatgccgccacccaattgtgagagcttgttgttcgatcggattgtttctcaaccttgatcgttgt 222  Q
    |||||||||||||||||||||||||||| ||||| | ||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44490758 gattgtgagagcttgttgttctctcctagggtttcggtgccgtcgcccaattgtgagagcttgttgttcgatcagattgtttctcaaccttgatcgttgt 44490857  T
Q  223 tctatttgtttcccttgtgttttggccgg 251  Q
    ||| | || ||||||||||  ||||||||    
T  44490858 tctttatg-ttcccttgtgccttggccgg 44490885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 331 - 567
Target Start/End: Complemental strand, 54565631 - 54565394
Alignment:
Q  331 gcaattctagatttaaagtacctagttcggcacttcaatccggacc-tcttattcttaagcgagacactagtctcccgaaataaaattgaagatttacgt 429  Q
    |||||||| |||||||||||| ||||||||||||| |||||||||| | ||||| ||||| |||||| |||||   || ||||||||||||| | |||||    
T  54565631 gcaattcttgatttaaagtacatagttcggcactttaatccggaccctattatttttaagtgagacattagtccatcgtaataaaattgaagctctacgt 54565532  T
Q  430 tatttgctcggctttgatttttgtttttctgttgattgtagtggtagacgaggaggtcttgcnnnnnnnnggcgtacttcttttagctgtcaaattgtaa 529  Q
    ||  |||| |  |||||||||||||||||||||||||||| ||||||| | || || |||||        ||||| | ||||||| |||||| |||| ||    
T  54565531 tacgtgcttgattttgatttttgtttttctgttgattgtactggtagaagtggtggccttgcattattttggcgtgcctcttttaactgtcagattgcaa 54565432  T
Q  530 attgctctgataatcatatttctgttgatgttgatgat 567  Q
    |||||||  ||||||||||||||||||| |||| ||||    
T  54565431 attgctcaaataatcatatttctgttgacgttgttgat 54565394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 422
Target Start/End: Complemental strand, 6010126 - 6010005
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    ||||||||  ||||| |||||||||||| ||||||||  ||  | ||||||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||    
T  6010126 tggaattgtcggggtgtaggtagcccgagtgcaattcctgaccttaagtacctagttcggcattttaatccggaccttttatttttaagtgagactctag 6010027  T
Q  401 tctc-ccgaaataaaattgaaga 422  Q
     ||| ||||||||||||||||||    
T  6010026 -ctcaccgaaataaaattgaaga 6010005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 17782893 - 17783014
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    ||||||||  ||||| |||||||||||| ||||||||  ||  | ||||| ||||||||||| ||||||| |||||| ||||| ||||| ||||| ||||    
T  17782893 tggaattgtcggggtgtaggtagcccgagtgcaattcccgaccttaagtatctagttcggcatttcaatctggaccttttatttttaagtgagactctag 17782992  T
Q  401 tctc-ccgaaataaaattgaaga 422  Q
     ||| ||||||||||||||||||    
T  17782993 -ctcaccgaaataaaattgaaga 17783014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 19091520 - 19091641
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    ||||||||  ||||| |||||||||||| ||||||||  ||  | ||||| ||||||||||| ||||||| |||||| ||||| ||||| ||||| ||||    
T  19091520 tggaattgtcggggtgtaggtagcccgagtgcaattcccgaccttaagtatctagttcggcatttcaatctggaccttttatttttaagtgagactctag 19091619  T
Q  401 tctc-ccgaaataaaattgaaga 422  Q
     ||| ||||||||||||||||||    
T  19091620 -ctcaccgaaataaaattgaaga 19091641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 8562048 - 8562169
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    ||||||||  ||||| |||||||||||| | ||||||| ||  | ||||||||||| ||||||||||| ||||| ||  | |||||||| ||||| ||||    
T  8562048 tggaattgtcggggtgtaggtagcccgagtacaattctcgaccttaagtacctagtccggcacttcaacccggatcttcttttcttaagtgagactctag 8562147  T
Q  401 tctc-ccgaaataaaattgaaga 422  Q
     ||| ||| ||||||||||||||    
T  8562148 -ctcaccgtaataaaattgaaga 8562169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 455
Target Start/End: Complemental strand, 12530193 - 12530143
Alignment:
Q  405 ccgaaataaaattgaagatttacgttatttgctcggctttgatttttgttt 455  Q
    ||||||||||||||||| ||| || ||||||||||| ||||||| ||||||    
T  12530193 ccgaaataaaattgaagcttttcgatatttgctcggttttgattcttgttt 12530143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 276 - 432
Target Start/End: Original strand, 42329338 - 42329494
Alignment:
Q  276 gtcgaggaaaatgagcctgataagttggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggac 375  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42329338 gtcgaggaaaatgagcctgataagttggaattgcaggggtttgggtagcccgaatgcaattccagatttaaagtacctagttcggcacttcaatccggac 42329437  T
Q  376 ctcttattcttaagcgagacactagtctcccgaaataaaattgaagatttacgttat 432  Q
    |||||||| ||||| |||||| |||||  ||| |||||||||||||| ||| |||||    
T  42329438 ctcttatttttaagtgagacattagtccaccgtaataaaattgaagaattatgttat 42329494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 141 - 248
Target Start/End: Original strand, 42328962 - 42329070
Alignment:
Q  141 ttctctcctacggttttgatgccgccacccaattgtgagagcttgttgttcgatcggattgtttctcaaccttgatcgttg-ttctatttgtttcccttg 239  Q
    |||||||||| ||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||    
T  42328962 ttctctcctagggtttcgctgccgccacccaattgcgagagcttgttgttcgatcagattgtttctcaactttgatcgttgtttctatttgttccccttg 42329061  T
Q  240 tgttttggc 248  Q
    ||| |||||    
T  42329062 tgtcttggc 42329070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 319 - 467
Target Start/End: Original strand, 6612710 - 6612858
Alignment:
Q  319 ggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactagtctcccgaaataaaattg 418  Q
    ||||||||||  |||| ||  |||||||| || ||  ||| |||||||||||||||| |  | |||||||| ||||||||||| ||||||||||||||||    
T  6612710 ggtagcccgagcgcaactcctgatttaaaatatctccttcagcacttcaatccggacgtactcttcttaagtgagacactagtatcccgaaataaaattg 6612809  T
Q  419 aagatttacgttatttgctcggctttgatttttgtttttctgttgattg 467  Q
    ||| ||||||||| ||||| || |||||||  |||||||| ||||||||    
T  6612810 aagttttacgttacttgcttggttttgattcctgtttttccgttgattg 6612858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 298 - 467
Target Start/End: Complemental strand, 27015208 - 27015039
Alignment:
Q  298 agttggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacac 397  Q
    |||||||| ||| |||| ||||| |||||||  ||| |||  ||||| || || || ||||| ||||||||||| ||| |  | || ||||| ||||||     
T  27015208 agttggaactgccggggattaggcagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacatactctttttaagtgagacat 27015109  T
Q  398 tagtctcccgaaataaaattgaagatttacgttatttgctcggctttgatttttgtttttctgttgattg 467  Q
    | ||   ||||||||||||||||| ||| || ||||||||||| ||||||| ||||||||||||||||||    
T  27015108 tggttcgccgaaataaaattgaagtttttcgatatttgctcggttttgattcttgtttttctgttgattg 27015039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 250 - 382
Target Start/End: Original strand, 31885 - 32016
Alignment:
Q  250 gggattgatcatgaagaagattaggtgtcgaggaaaatgagcctgataagttggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagt 349  Q
    |||||||||||||||||  ||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  31885 gggattgatcatgaagacaattagttgtcgaggaaa-tgagtctgataagttggaattgcaggggtttgggtagcccgaatgcaattccagatttaaagt 31983  T
Q  350 acctagttcggcacttcaatccggacctcttat 382  Q
    | |||||| |||||||||| |||||||||||||    
T  31984 atctagtttggcacttcaaaccggacctcttat 32016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 299 - 477
Target Start/End: Complemental strand, 22790196 - 22790018
Alignment:
Q  299 gttggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacact 398  Q
    |||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||  || ||||||||||| |||||| |    
T  22790196 gttggaattgcaggggtttaggtagcccgagtgcaatttctgatttaaagtacctagttcggcacttcaatccggttctattattcttaagtgagacatt 22790097  T
Q  399 agtctcccgaaataaaattgaagatttacgttatttgctcggctttgatttttgtttttctgttgattgtagtggtaga 477  Q
    ||||  ||| ||||||||||||| ||||||| |  |||| || |||||||  || |||||||||||||||  |||||||    
T  22790096 agtccaccgtaataaaattgaagctttacgtcacctgcttggttttgattgatgcttttctgttgattgttatggtaga 22790018  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 301 - 419
Target Start/End: Original strand, 22288426 - 22288544
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    ||||||||  ||||| |||||||||||| | ||||||  ||  | ||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||    
T  22288426 tggaattgtcggggtgtaggtagcccgagtacaattcccgaccttaagtacctagttcggcatttcaatccggaccttttatttttaagtgagactctag 22288525  T
Q  401 tctc-ccgaaataaaattga 419  Q
     ||| |||||||||||||||    
T  22288526 -ctcaccgaaataaaattga 22288544  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 301 - 447
Target Start/End: Original strand, 41327550 - 41327696
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    ||||||||| |||||||||||||| |||  ||||||   ||  |||| ||||||||||  |||||||||||||||||| | |||||||| |||| | |||    
T  41327550 tggaattgccggggtttaggtagctcgagcgcaattgctgacctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattag 41327649  T
Q  401 tctcccgaaataaaattgaagatttacgttatttgctcggctttgat 447  Q
    ||  ||||||||||||||||||||||||||| ||||| || ||||||    
T  41327650 tccaccgaaataaaattgaagatttacgttacttgcttggttttgat 41327696  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 344 - 447
Target Start/End: Original strand, 41337824 - 41337927
Alignment:
Q  344 taaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactagtctcccgaaataaaattgaagatttacgttatttgctcggctt 443  Q
    |||| ||||||||||  |||||||||||||||||| | |||||||| |||| | |||||  ||||||||||||||||||||||||||| ||||| || ||    
T  41337824 taaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttt 41337923  T
Q  444 tgat 447  Q
    ||||    
T  41337924 tgat 41337927  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 465
Target Start/End: Original strand, 29383116 - 29383269
Alignment:
Q  311 ggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactagtctcccgaaa 410  Q
    ||||||||||||||| |  ||||||||  || || || ||||| |||||  ||||||||  ||||||  |||| ||||| ||||||||||||  ||||||    
T  29383116 ggggtttaggtagccggg-tgcaattcccgacttgaaatacctcgttcgatacttcaatatggacctactatttttaagtgagacactagtccaccgaaa 29383214  T
Q  411 taaaattgaagatttacgttatttgctcggctttgatttttgtttttctgttgat 465  Q
    ||||||||||||||||||||||||||| || ||||||| ||| |||| |||||||    
T  29383215 taaaattgaagatttacgttatttgctgggttttgattcttgcttttatgttgat 29383269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 422
Target Start/End: Complemental strand, 15994500 - 15994389
Alignment:
Q  311 ggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactagtctc-ccgaa 409  Q
    ||||| |||||||||||| |||||||| |||  | || |||||||||||||| |||||||||||||| ||||| ||||| |||||  ||| ||| |||||    
T  15994500 ggggtgtaggtagcccgagtgcaattccagaccttaaatacctagttcggcatttcaatccggaccttttatttttaagtgagactttag-ctcaccgaa 15994402  T
Q  410 ataaaattgaaga 422  Q
    |||||||||||||    
T  15994401 ataaaattgaaga 15994389  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 419
Target Start/End: Original strand, 14501770 - 14501888
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    ||||||||  ||||| |||||||||||| ||||||||  ||  | ||||||||||||||||| ||||||| | |||| ||||| ||||| ||||| ||||    
T  14501770 tggaattgtcggggtgtaggtagcccgagtgcaattcccgaccttaagtacctagttcggcatttcaatctgaaccttttatttttaagtgagactctag 14501869  T
Q  401 tctc-ccgaaataaaattga 419  Q
     ||| |||||||||||||||    
T  14501870 -ctcaccgaaataaaattga 14501888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 22184913 - 22185034
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    ||||||||  ||||||||| |||||||| | ||||||  ||  | |||| |||||| |||| |||||||||||| || ||||| ||||| ||||| ||||    
T  22184913 tggaattgtcggggtttagatagcccgagtacaattcccgacatcaagtgcctagtccggcccttcaatccggatcttttatttttaagtgagactctag 22185012  T
Q  401 tctc-ccgaaataaaattgaaga 422  Q
     ||| | ||||||||||||||||    
T  22185013 -ctcacagaaataaaattgaaga 22185034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 3951 - 4072
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    |||||||||  |||| |||||||||||| |||||||| |||  | ||||||||||| ||||||||||||||||| ||  | |||||||| ||||| ||||    
T  3951 tggaattgccagggtgtaggtagcccgagtgcaattccagaccttaagtacctagtccggcacttcaatccggatcttcttttcttaagtgagactctag 4050  T
Q  401 tctc-ccgaaataaaattgaaga 422  Q
     ||| ||||||||||||||||||    
T  4051 -ctcaccgaaataaaattgaaga 4072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 298 - 467
Target Start/End: Original strand, 4575 - 4744
Alignment:
Q  298 agttggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacac 397  Q
    |||||||| ||| |||| ||||| |||||||  ||| |||  ||||| || || || ||||| ||||||||||| ||| |  | || ||||| ||||||     
T  4575 agttggaactgccggggattaggcagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacatactctttttaagtgagacat 4674  T
Q  398 tagtctcccgaaataaaattgaagatttacgttatttgctcggctttgatttttgtttttctgttgattg 467  Q
    | ||   ||||||||||||||||| ||| || ||||||||||| ||||||| ||||||||||||||||||    
T  4675 tggttcgccgaaataaaattgaagtttttcgatatttgctcggttttgattcttgtttttctgttgattg 4744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 285 - 422
Target Start/End: Original strand, 45009939 - 45010075
Alignment:
Q  285 aatgagcctgataagttggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattc 384  Q
    |||||| |||||||||||||||||  ||| ||||||||||||||  |||||||  || || || |||||| |||||||||| ||||||||| || | |||    
T  45009939 aatgagtctgataagttggaattgtcggg-tttaggtagcccgagcgcaattcccgacttgaaatacctaattcggcactttaatccggacatcctcttc 45010037  T
Q  385 ttaagcgagacactagtctcccgaaataaaattgaaga 422  Q
    ||||| |||||  |||||   |||||||||||||||||    
T  45010038 ttaagtgagactttagtccatcgaaataaaattgaaga 45010075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 293 - 464
Target Start/End: Complemental strand, 8866331 - 8866163
Alignment:
Q  293 tgataagttggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcga 392  Q
    |||| |||||||||||  |||| ||||||||||| || |||||||  || || || ||||| |||||||||||||||| ||||||  |||| ||||| ||    
T  8866331 tgatcagttggaattgtcggggcttaggtagccctaacgcaattccggacttgaaatacctggttcggcacttcaatcaggacctactatttttaagtga 8866232  T
Q  393 gacactagtctc--ccgaaataaaattgaagatttacgttatttgctcggctttgatttttgtttttctgttga 464  Q
    |||||||||| |  ||| |||||     |||| |||| ||||||||| || ||||||| |||| ||||||||||    
T  8866231 gacactagtccccaccgtaataa-----aagaattacattatttgcttggttttgattgttgtatttctgttga 8866163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 301 - 422
Target Start/End: Complemental strand, 3209102 - 3208981
Alignment:
Q  301 tggaattgcaggggtttaggtagcccgaatgcaattctagatttaaagtacctagttcggcacttcaatccggacctcttattcttaagcgagacactag 400  Q
    ||||||||  ||||| ||||||||||||   ||||||  ||| | ||||||||||| |||||||||||||||||  | |||||| |||| ||||| ||||    
T  3209102 tggaattgtcggggtataggtagcccgagcacaattcctgatcttaagtacctagtccggcacttcaatccggatattttattcataagtgagactctag 3209003  T
Q  401 tctc-ccgaaataaaattgaaga 422  Q
     ||| ||||||||||||||||||    
T  3209002 -ctcaccgaaataaaattgaaga 3208981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 9496251 - 9496306
Alignment:
Q  409 aataaaattgaagatttacgttatttgctcggctttgatttttgtttttctgttga 464  Q
    ||||| ||||||||||||| |||| |||||| |||||||| || ||||||||||||    
T  9496251 aataagattgaagatttacattatgtgctcgactttgattcttatttttctgttga 9496306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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